GgaEX7012057 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:H9KZK0]
Coordinates
chrLGE64:613963-616110:-
Coord C1 exon
chrLGE64:615802-616110
Coord A exon
chrLGE64:614476-614805
Coord C2 exon
chrLGE64:613963-614280
Length
330 bp
Sequences
Splice sites
3' ss Seq
ATCCCAGATTGTGTTTTCAGTGA
3' ss Score
4.49
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
CTGATGTACGGCTGGTGAATGGTCCCAGCCGCTGTGCCGGGAGAGTGGAGGTCCTGCACAACGGGCAGTGGGGGACGGTGTGCGATGATGGCTGGGACCTGAATGATGCCAAGGTGGTGTGCAGGCAGCTGGGCTGTGGAACAGTGCTGTCGGCCCCAGTCAGGGCTTACTTTGGGCAAGGCACTGGGGACATCTGGCTGGATGATGTGAGCTGCACTGGGATCGAGGATGCACTCCCGCATTGCCAAGCCCGTCCATGGGGACAGCATAACTGCAACCATAGAGAAGATGCTGGTGTGGTCTGCTTAG
Seq A exon
TGACAGACACCTCAAAACCCAACTTCCTGCGGCTAGTGAGTGGCCCCAACCGCTGTGCTGGCAGAGTGGAGGTGCTGCATGATGGGCAGTGGGGCACAGTGTGCGATGATGGCTGGAACCTCCAGGCTGCCACTGTGGTGTGTCGGCAGCTGAACTGCGGCAGGGCTGAGTCAGCCCCCAGCGGTGCTCGCTTTGGGCAAGGCACTGGGCGTATCTGGCTGGATGACGTGAACTGTGCTGGGACTGAGGATGCCCTTCACCAGTGTCGAGCCCGTCCATGGGGACTGCATAACTGCAACCACAGAGAAGATGCTGGCGTGGTTTGCTCAG
Seq C2 exon
AGATTACAGCCAAAGTGCGGCTGGTGGATGGTCCACACCGCTGTGCCGGGAGGTTGGAGGTGTTTCAGAACGAGAGATGGGGGACCGTGTGTGGCAACGGCTGGGACATGAATGACGCCATAGTGGTGTGCCGGCAGCTGGGCTGTGGCATTGCTCTCTCGGCTCCTGTCCAGGCTCACTTCGGCCAAGGGTCAGATCCCATCTGGATGAACAGAGTGTCCTGCATCGGGACAGAAAGTTCCATTTCAGAATGCTTGTCGTCTCCATGGGGAATCCAACTGTGCACCCACATGGATGATGCCGGTGTGGAATGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009103-'29-43,'29-32,32-43=AN
Average complexity
A_C3
Mappability confidence:
100%=100=77%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=94.2)
A:
PF0053013=SRCR=WD(100=88.3)
C2:
PF0053013=SRCR=WD(100=91.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTTGAGTGAGTGTGCTGGG
R:
CATTCACCAACCGGATCTGCA
Band lengths:
358-688
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]