GgaEX1002179 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:H9KZK0]
Coordinates
chrLGE64:612929-656501:-
Coord C1 exon
chrLGE64:656172-656501
Coord A exon
chrLGE64:617850-618176
Coord C2 exon
chrLGE64:612929-613255
Length
327 bp
Sequences
Splice sites
3' ss Seq
CACCCTGGTTATGTTTTCAGACA
3' ss Score
7.09
5' ss Seq
CAGGTAATC
5' ss Score
6.99
Exon sequences
Seq C1 exon
GGGCACCTGCTCCAGGTGAGATCCAGGTCAGGCTGATAAACGGCTCAAGCTCTTGCTCTGGCAGAGTGGAAATCTTCCACAATGGCAGCTGGGGCACGGTGTGTGATGATGGCTGGAATATGGCGGCTGCTGAAGTGGTGTGCAGAGAAATGGGCTGTGGCTCAGCTCTGTCAGCCCCCGTTGGGGCTACTTTTGGGCAAGGGGCAGGACAAATTTGGATGGATGATGTGACCTGTGCTGGGACGGAGGCTGCCCTTTCTCTGTGCCAGGTCAGTTCCTGGGGAAGCCACAATTGTGGCCACAGAGAGGATGCTGGTGTTGAATGCTCAG
Seq A exon
ACATAGACCTACGGAGCCCAGAAGCCATACGGCTGGTGAATGGCCCACACCGCTGCTCTGGACAGGTGGAGGTGTTTCACAATCAGCAGTGGGGGACGGTGTGCAATGATGACTGGGATCTGAATGATGCCAATGTGGTGTGCCGGCAGCTGGACTGTGGAACGGCAGTGTCTCTGAGGAGACCTTCATCTGGGCAAGATTCTAGACCCATCTGGCTAGAAGGGGTGAGATGTCTTGGGACAGAAGCTACCCTCACTGAATGCCCAGTCAAGCCTAGAGGGCTCTATAGTTGCAGCCATTTGGAAGATGCTGGTGTTGTGTGCTCAG
Seq C2 exon
CGTTGTCAGATGACACATCAACTCTTCGCCTGGTGAATGGCCCACATCGCTGTTCTGGTAGAGTCGAGGTGTTTCACAATCAGCAATGGGGAACTGTCTGCGATGATGGCTGGGACATGAATGATGCCATGGTGGTGTGCAACCAGTTGGGCTGTGGGGAAGCACTGTCAGCCACAACACAAGCTTCATTTGGTCGAGGGGCGGATCCCATCTGGCTGGACAGAGTTGCTTGCACTGGGAGAGAAAACACTCTCATACAGTGCAGGGCCAGACCCTGGGGAGTCAACGTCTGCACACATGAAGAAGATGCTGGTGTTGTGTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009103_MULTIEX1-19/22=C1-21
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=88.3)
A:
NA
C2:
PF0053013=SRCR=WD(100=91.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
- GgaALTA1001230-1/4
- GgaALTA1001230-4/4
- GgaEX1002169
- GgaEX1002170
- GgaEX1002171
- GgaEX1002172
- GgaEX1002173
- GgaEX1002174
- GgaEX1002175
- GgaEX1002176
- GgaEX1002177
- GgaEX1002178
- GgaEX1002180
- GgaEX1002181
- GgaEX1002182
- GgaEX1002184
- GgaEX1002185
- GgaEX1002186
- GgaEX1002187
- GgaEX1002188
- GgaEX1002189
- GgaEX1002190
- GgaEX7012057
- GgaINT1001353
- GgaINT1001359
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGATGTGACCTGTGCTGGG
R:
CAGTGCAAGCAACTCTGTCCA
Band lengths:
346-673
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]