GgaEX1002188 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:H9KZK0]
Coordinates
chrLGE64:624067-650084:-
Coord C1 exon
chrLGE64:649770-650084
Coord A exon
chrLGE64:649419-649707
Coord C2 exon
chrLGE64:624067-624396
Length
289 bp
Sequences
Splice sites
3' ss Seq
GGTGTGATCTCTTTGCTTAGGAA
3' ss Score
6.76
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
ATCCTGCGGCATTGAGACTGGTGAATGGTTCAAACTTCTGTGCTGGGAGAGTGGAAGTGCTCCACAAGCAGCTGTGGGGATCTGTGTGTGATGACAGCTGGGACATGAAGGATGCTGCAGTTGTGTGCCGGCAGCTGGGCTGTGGGACGGTACTCTCGGCCCCTGGCAGAGCTTGGTTTGGGCGAGGGCACAATGCCATCTGGCTGGATGATGTGAACTGCACGGGGACGGAAAACAATCTCCTGGAGTGCTTGGCCAAGCCATGGGGAGAACACAACTGTAATCATGGTGAAGATGCTGGTGTGGTGTGTTCAG
Seq A exon
GAAGGAAAAACTAATGGAGAATGAAGATGGAATATTCTTCAAGGCAAACTGAGTCCTACATTTCCAGACTCCACCTGACCCACTAGAGTCATTTGCCCATGATCACCATTATCAACTCACAGGAGATTAGACCTTGGCTCCCCAGAGATCCCTTCCAATCAACACCATGGTGACCCACAGTTTCCACTCACCTTGGTCAACAGAATCATCCCAGAATGTGGATTCCTGAGTTCCAGACGGGACTCTGGCTAAGTCTATGGATGTGGTGTTATGTGGAGGAGTGTTTAAG
Seq C2 exon
AATCCCACATCTCCAAGATTGGTCGGCTCCAGCTGCTCGATGGCCCCAGCCGTTGTGCAGGAAGAGTGGAGGTGCTCCATGACCAAAGATGGGGCACCATCTGCGATGATGGCTGGGACCTCGCTGATGCTAATGTGGTGTGCCGGCAACTGGGCTGTGGAACAGCAGTGCTGGCCACTAAAGCAGCTCACTATGGGAGAGGCCAAGATACCATCTGGTTGGATGAGGTGAACTGCACTGGTATGGAGGAATCCATCTTCGACTGCAAGGCAAGTGCATGGGGAGTCAACAACTGCTACCATGGAGAGGATGCTGGAGTGCTATGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009103_MULTIEX1-7/22=6-13
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=87.5)
A:
NA
C2:
PF0053013=SRCR=WD(100=93.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGCTGGTGTGGTGTGTTCA
R:
CACTTGCCTTGCAGTCGAAGA
Band lengths:
298-587
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]