GgaEX1002172 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:H9KZK0]
Coordinates
chrLGE64:624067-638613:-
Coord C1 exon
chrLGE64:638299-638613
Coord A exon
chrLGE64:635875-636204
Coord C2 exon
chrLGE64:624067-624396
Length
330 bp
Sequences
Splice sites
3' ss Seq
CCCTCTGCTCTCCACTGCAGGTA
3' ss Score
12.56
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
AGCACCGTCTGGTGAGGCTGATGAATGGATCGAACAACTGCATTGGGAGAGTTGAGGTTTTTCACGACCAGAAGTGGGGGACCGTGTGTGATGACACCTGGGACCTACAGGATGCTGCAGTCGTGTGCCGGGAGCTGGGCTGTGGGATGGCAATGTCAGCACCAGGCTCAGCTCATTTTGGGCAAGGTTCAGACCCCATCTGGCAGGACAACGTTCACTGTATAGGAACTGAGTCCACCCTTGAGGAGTGTACACTGAACAACTGGGGAGAACACAACTGCGGTCATAGTGAGGATGCTGGCGTGGTGTGCACAG
Seq A exon
GTACCAACCCCTTGCAGCTACGGGTGCAGGATGGTCCTGGTCCCTGTGCAGGGCGTGTGGAGGTTCTGTACAACGCTACCTGGTATGGCGTCTGTGACAGCAGCTGGACCATGCTGGAGGCCAAGGTGGTCTGCAAGCAGCTGGGCTGTGGACCAGCAGAGTCTGCACCCATTGGAGCCCAGTTCAGCCAAGGGCATGACCTTACCTTGCTGGAGGGGCTGAACTGTCGTGGCACGGAATCACTCTTGCTGGAGTGCCAGCAGAGAAATACAGGCCCTGGACTGTGCAGACATGGCATGGCAGCTGGTGTGGTGTGCACAGAGATGAAAG
Seq C2 exon
AATCCCACATCTCCAAGATTGGTCGGCTCCAGCTGCTCGATGGCCCCAGCCGTTGTGCAGGAAGAGTGGAGGTGCTCCATGACCAAAGATGGGGCACCATCTGCGATGATGGCTGGGACCTCGCTGATGCTAATGTGGTGTGCCGGCAACTGGGCTGTGGAACAGCAGTGCTGGCCACTAAAGCAGCTCACTATGGGAGAGGCCAAGATACCATCTGGTTGGATGAGGTGAACTGCACTGGTATGGAGGAATCCATCTTCGACTGCAAGGCAAGTGCATGGGGAGTCAACAACTGCTACCATGGAGAGGATGCTGGAGTGCTATGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009103_MULTIEX1-12/22=11-13
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=92.5)
A:
PF0053013=SRCR=WD(100=88.3)
C2:
PF0053013=SRCR=WD(100=93.3)
Main Inclusion Isoform:
ENSGALT00000014816fB4039
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGGCTCAGCTCATTTTGG
R:
CCTCTCCCATAGTGAGCTGCT
Band lengths:
357-687
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]