GgaEX1002185 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:H9KZK0]
Coordinates
chrLGE64:624067-653357:-
Coord C1 exon
chrLGE64:653043-653357
Coord A exon
chrLGE64:652233-652547
Coord C2 exon
chrLGE64:624067-624396
Length
315 bp
Sequences
Splice sites
3' ss Seq
TCTGCCTCTTTCCATTTCAGACC
3' ss Score
12.05
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
Exon sequences
Seq C1 exon
ATCCAATGGCAGTCCAGCTGGTGAATGGCCCAAGCCGCTGTGCTGGGAGAGTCGAGGTGCTGGAGCGACACCAATGGGGGACAGTGTGCGATGACAACTGGGACATAAGAGATGCCAACGTTGTGTGCTGGCAGCTAGGCTGTGGTGTGGCCATTGCAGCTCCTGGCTTGGCTCACTTTGGTCGGGGAAGTGGTCCCATCTGGCTGTCTGAAGTCAACTGCACAGGGACAGAAGATAGCCTCTCCAAATGCAGGGCCAGGCCTAAAGGAGTCACTGGGTGTCACCACGGAGAAGATGCCAGTGTGGTGTGCTCAG
Seq A exon
ACCCCACCGAGGTCCGGCTGGTGAATGGCTCAAATCACTGCTCTGGGAGAGTTGAAGTGCTGCATAATCAGCGATGGGGAACTGTGTGTGATGATGGCTGGGACTTAAACGATGCAGAAGTTGTGTGCCAGCAACTGGGCTGTGGTACAGCCATATGGGCTCCATCTGCAGCTCGGTTTGGGCAGGGATATGAGCCCATCTGGCTGGATGATGTGAACTGCACAGGATCAGAGGCTGCCCTCTCTGAGTGTAGGGCCAGACCATGGGGAGTGAGTAATTGCAACCACAAAGAAGATGCTGGTGTGGAGTGTATAG
Seq C2 exon
AATCCCACATCTCCAAGATTGGTCGGCTCCAGCTGCTCGATGGCCCCAGCCGTTGTGCAGGAAGAGTGGAGGTGCTCCATGACCAAAGATGGGGCACCATCTGCGATGATGGCTGGGACCTCGCTGATGCTAATGTGGTGTGCCGGCAACTGGGCTGTGGAACAGCAGTGCTGGCCACTAAAGCAGCTCACTATGGGAGAGGCCAAGATACCATCTGGTTGGATGAGGTGAACTGCACTGGTATGGAGGAATCCATCTTCGACTGCAAGGCAAGTGCATGGGGAGTCAACAACTGCTACCATGGAGAGGATGCTGGAGTGCTATGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009103_MULTIEX1-4/22=3-13
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=92.5)
A:
PF0053013=SRCR=WD(100=92.5)
C2:
PF0053013=SRCR=WD(100=93.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAAGATGCCAGTGTGGTG
R:
TAGCACTCCAGCATCCTCTCC
Band lengths:
351-666
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]