GgaEX1002171 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:H9KZK0]
Coordinates
chrLGE64:624067-639525:-
Coord C1 exon
chrLGE64:639193-639525
Coord A exon
chrLGE64:638299-638628
Coord C2 exon
chrLGE64:624067-624396
Length
330 bp
Sequences
Splice sites
3' ss Seq
GCACTTTGTTCCCTATACAGACA
3' ss Score
7.79
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
AAGGGATAATCACCGAAACACCAGCTCAGCTGCGCCTGGTGAATGGCCCCAGCCAGTGCTCAGGACGCGTGGAGGTGCTGCACGACCACCACTGGGGCACAGTGTGTGATGATGACTGGAGTCTGAGCGAGGCCATGGTGGTGTGCCGGCAACTGGGTTGCGGGGCGGCTGTCTCAGCCCCAGGCTCAGCTCACTTTGGGCAAGGCTCTGGCCATATTTGGCTGGATAATGTGAACTGCACAGGTGCAGAAACTGTGCTCTCTGAGTGCCCGAGCAGGCCATGGGGATCCAATGACTGCAGCCACAGGGAGGATGCTGGTGTGGTGTGCTCAG
Seq A exon
ACACAAAGACTTCAGAGCACCGTCTGGTGAGGCTGATGAATGGATCGAACAACTGCATTGGGAGAGTTGAGGTTTTTCACGACCAGAAGTGGGGGACCGTGTGTGATGACACCTGGGACCTACAGGATGCTGCAGTCGTGTGCCGGGAGCTGGGCTGTGGGATGGCAATGTCAGCACCAGGCTCAGCTCATTTTGGGCAAGGTTCAGACCCCATCTGGCAGGACAACGTTCACTGTATAGGAACTGAGTCCACCCTTGAGGAGTGTACACTGAACAACTGGGGAGAACACAACTGCGGTCATAGTGAGGATGCTGGCGTGGTGTGCACAG
Seq C2 exon
AATCCCACATCTCCAAGATTGGTCGGCTCCAGCTGCTCGATGGCCCCAGCCGTTGTGCAGGAAGAGTGGAGGTGCTCCATGACCAAAGATGGGGCACCATCTGCGATGATGGCTGGGACCTCGCTGATGCTAATGTGGTGTGCCGGCAACTGGGCTGTGGAACAGCAGTGCTGGCCACTAAAGCAGCTCACTATGGGAGAGGCCAAGATACCATCTGGTTGGATGAGGTGAACTGCACTGGTATGGAGGAATCCATCTTCGACTGCAAGGCAAGTGCATGGGGAGTCAACAACTGCTACCATGGAGAGGATGCTGGAGTGCTATGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009103_MULTIEX1-11/22=10-13
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=87.5)
A:
PF0053013=SRCR=WD(100=92.5)
C2:
PF0053013=SRCR=WD(100=93.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCAATGACTGCAGCCACAG
R:
CAGTTGTTGACTCCCCATGCA
Band lengths:
342-672
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]