GgaEX1002190 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:H9KZK0]
Coordinates
chrLGE64:624067-647459:-
Coord C1 exon
chrLGE64:647391-647459
Coord A exon
chrLGE64:640466-640813
Coord C2 exon
chrLGE64:624067-624396
Length
348 bp
Sequences
Splice sites
3' ss Seq
CACGTCTTTACTTTTTATAGGCT
3' ss Score
7.83
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
AATCAGAGAATATCCCAAGTCTGACGGAACCACAAGGACCATCAAGTTCAACTCCTAACCCCTCACCAG
Seq A exon
GCTCAGACAGCCACCACCTGGATCCTAGCACTGGTTCTGCAGAGCTGCGCCTGGTGAATGGCTTGAACCGCTGTTCTGGGAGAGTGGAGATACTGTATGATCACCAGTGGGGGACTGTGTGTGATGACGACTGGAGCTTTACTAATGCCAAAGTGGTGTGCCGGCAGCTGGGCTGTGGGGAAGCAGTATCAGCCTATAGCTCGGCACACTTTGGCCAGGGGTCAGGTCCCATTTGGCTAGACAACGTTCAGTGCATTGGGACGGAAACTGCCCTGTCTCAATGTCAGGCCAGGCCACTGGGCTTCAGTAACTGTGACCACGGAGAAGATGCTGGAGTTGTGTGTGCAG
Seq C2 exon
AATCCCACATCTCCAAGATTGGTCGGCTCCAGCTGCTCGATGGCCCCAGCCGTTGTGCAGGAAGAGTGGAGGTGCTCCATGACCAAAGATGGGGCACCATCTGCGATGATGGCTGGGACCTCGCTGATGCTAATGTGGTGTGCCGGCAACTGGGCTGTGGAACAGCAGTGCTGGCCACTAAAGCAGCTCACTATGGGAGAGGCCAAGATACCATCTGGTTGGATGAGGTGAACTGCACTGGTATGGAGGAATCCATCTTCGACTGCAAGGCAAGTGCATGGGGAGTCAACAACTGCTACCATGGAGAGGATGCTGGAGTGCTATGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009103_MULTIEX1-9/22=8-13
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0053013=SRCR=WD(100=95.1)
C2:
PF0053013=SRCR=WD(100=93.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCTGACGGAACCACAAGGA
R:
GTTGTTGACTCCCCATGCACT
Band lengths:
345-693
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]