MmuEX6014659 @ mm9
Exon Skipping
Gene
ENSMUSG00000047517 | Dmbt1
Description
deleted in malignant brain tumors 1 [Source:MGI Symbol;Acc:MGI:106210]
Coordinates
chr7:138248363-138251425:+
Coord C1 exon
chr7:138248363-138248389
Coord A exon
chr7:138249667-138249990
Coord C2 exon
chr7:138251399-138251425
Length
324 bp
Sequences
Splice sites
3' ss Seq
TGACTACCACTTTATCTCAGGAA
3' ss Score
5.95
5' ss Seq
CACGTGAGT
5' ss Score
9.3
Exon sequences
Seq C1 exon
GTCCTCCATCATTCCCAAACATAACTG
Seq A exon
GAAATGATTCTTCATTGGCGCTGAGGCTGGTAAATGGATCAAACCGGTGTGAGGGCCGAGTGGAGATCTTGTACAGAGGCTCTTGGGGCACCGTGTGTGATGACAGCTGGGGCATCAGTGACGCCAATGTGGTCTGCAGACAGCTCGGTTGTGGCTCTGCTCTGTCTGCACCAGGAAATGCTTGGTTCGGTCAGGGCTCAGGGCTCATTGTCCTGGATGATGTGTCTTGCTCGGGGTATGAGTCTCACCTGTGGAACTGTCATCATCCTGGCTGGCTTGTCCATAACTGTCGCCATTCTGAGGATGCAGGAGTCATCTGTGCAC
Seq C2 exon
TCCCTGAGGTGACTTCTCCCAGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047517-'38-39,'38-38,39-39=AN
Average complexity
A_S
Mappability confidence:
75%=50=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0053013=SRCR=WD(100=89.9)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: