GgaEX1002187 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:H9KZK0]
Coordinates
chrLGE64:624067-651488:-
Coord C1 exon
chrLGE64:651174-651488
Coord A exon
chrLGE64:649770-650084
Coord C2 exon
chrLGE64:624067-624396
Length
315 bp
Sequences
Splice sites
3' ss Seq
ACACATGCATCCTGTTTCAGATC
3' ss Score
9.24
5' ss Seq
CAGGTAACG
5' ss Score
10.52
Exon sequences
Seq C1 exon
GACCAACCCAGCTCCGCCTGGTGAATGGCTCTAACCGCTGCTCTGGAAGGGTCGAGGTCCTTCACAACCAGCAATGGGGAACGGTGTGTGACAACGGCTGGGACCTGAATGATGCAAAGGTGGTGTGCCAGCAGCTGGGCTGTGGGGCAGCTGTGTCAGCTCTGGGCTCAGCCCACTTTGGGCAAGGATCCAACCCTATTTGGCTGGAGGATGTTGAGTGCACAGGGATGGAAGGTGCCCTCTCTGAATGCAGATCCAGGAAAGGGGAGATGAGTAAATGCAGTCATGGTGAAGATGCTGGTGTTGTGTGCTCAG
Seq A exon
ATCCTGCGGCATTGAGACTGGTGAATGGTTCAAACTTCTGTGCTGGGAGAGTGGAAGTGCTCCACAAGCAGCTGTGGGGATCTGTGTGTGATGACAGCTGGGACATGAAGGATGCTGCAGTTGTGTGCCGGCAGCTGGGCTGTGGGACGGTACTCTCGGCCCCTGGCAGAGCTTGGTTTGGGCGAGGGCACAATGCCATCTGGCTGGATGATGTGAACTGCACGGGGACGGAAAACAATCTCCTGGAGTGCTTGGCCAAGCCATGGGGAGAACACAACTGTAATCATGGTGAAGATGCTGGTGTGGTGTGTTCAG
Seq C2 exon
AATCCCACATCTCCAAGATTGGTCGGCTCCAGCTGCTCGATGGCCCCAGCCGTTGTGCAGGAAGAGTGGAGGTGCTCCATGACCAAAGATGGGGCACCATCTGCGATGATGGCTGGGACCTCGCTGATGCTAATGTGGTGTGCCGGCAACTGGGCTGTGGAACAGCAGTGCTGGCCACTAAAGCAGCTCACTATGGGAGAGGCCAAGATACCATCTGGTTGGATGAGGTGAACTGCACTGGTATGGAGGAATCCATCTTCGACTGCAAGGCAAGTGCATGGGGAGTCAACAACTGCTACCATGGAGAGGATGCTGGAGTGCTATGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009103_MULTIEX1-6/22=5-13
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=92.5)
A:
PF0053013=SRCR=WD(100=87.5)
C2:
PF0053013=SRCR=WD(100=93.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGATGTTGAGTGCACAGGG
R:
CCAGTGCAGTTCACCTCATCC
Band lengths:
350-665
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]