MmuEX6008294 @ mm9
Exon Skipping
Gene
ENSMUSG00000035279 | A430110N23Rik
Description
RIKEN cDNA A430110N23 gene [Source:MGI Symbol;Acc:MGI:3606211]
Coordinates
chr7:4887865-4889234:+
Coord C1 exon
chr7:4887865-4888428
Coord A exon
chr7:4888510-4888824
Coord C2 exon
chr7:4889067-4889234
Length
315 bp
Sequences
Splice sites
3' ss Seq
GAGCCTCCCACCTCCCCCAGGTC
3' ss Score
8.62
5' ss Seq
CTGGTACCA
5' ss Score
2.73
Exon sequences
Seq C1 exon
AGATCAGGATGCCTGGCTCCCAGGAGAGCTAACCACCAAACCTTCTGCCAGTCTCACCTCCAGTGTGCCACAGAAACCCACAAAGGTTCCAGGGAAAGCTCCCAAGAGTACCAAGAAGTGGGTGACTAAAAATGCAAGGAGACCAACCACTCAGCCCCCTGGGATGCCAACCACCAAACATTCCAGGGCCCCAGGCACCCCAACCTCCCTACATCCAACAGCACGTACCTCTGAGTTACCAAAGAGACTGACCACTGAGGCTCCCCACAGGCAGACCTCACATACCACTGTAAGGCTGACCCCTAGGGTCCCCTGGGAGTGGACCTCAGAGCCTGTGGTGTCACAGTCCACTCAAGGTCCCCAAGAAGTGACCTCTGAGGCCACCACAACGGAAAACCCTCAGACCTCTTTGGAGCCATCGGGTGAGAACACCGAAGGCTCTCTGGAATCATCCCAAGATCCAGCTACCACCCCAACTGCTGGAGTCCCTGTGCCATCAG
Seq A exon
GTCCCTTCCGGGTTCGTCTGGCTGATGGGCCCAACAGGTGTGCTGGCCGGCTAGAGGTGTGGCATGCTGGACTCTGGGGAACAGTCTGTGATGACAGCTGGGACATCCGGGATGCCACAGTGGCCTGCTGGGAGCTGGGTTGCGGAAAGGTCCGGCCCCGAGTAGGCAAAACTCACTATGGCCCTGGCACTGGGCCCATCTGGTTGGATGACATGGGCTGTAAAGGAAGTGAGATGTCACTGAGTGACTGCCCCTCGGGGGCATGGGGGAAGCACAACTGTGACCACGAAGAAGACGTGGTGCTCACCTGCACTG
Seq C2 exon
GCTACACGGGTGATGACGATTATCCTTCCTGGACCTGGGACCCTACTTCCGGAGAGGACCTGACCAAAGGGACCACAGTGGCTGCGCGGCCTGGACATACACTTTCCTGGGCTACCACTACAAACACTGAAGTCCCCTCTCCAGCAACACAGAACCTTCCAGACACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035279-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.894 A=0.170 C2=0.842
Domain overlap (PFAM):
C1:
NO
A:
PF0053013=SRCR=WD(100=92.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAACAGCACGTACCTCTGA
R:
GTCCTCTCCGGAAGTAGGGTC
Band lengths:
346-661
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: