HsaEX6096825 @ hg38
Exon Skipping
Gene
ENSG00000179954 | SSC5D
Description
scavenger receptor cysteine rich family member with 5 domains [Source:HGNC Symbol;Acc:HGNC:26641]
Coordinates
chr19:55499816-55501201:+
Coord C1 exon
chr19:55499816-55500412
Coord A exon
chr19:55500490-55500804
Coord C2 exon
chr19:55501034-55501201
Length
315 bp
Sequences
Splice sites
3' ss Seq
CCTAAGGGCCTTCCACGCAGGCC
3' ss Score
4.18
5' ss Seq
CTGGTACCA
5' ss Score
2.73
Exon sequences
Seq C1 exon
CACCAAGCCCTCTGCAAGTGTGACTGCCAGTGTTCTGGAGAAAACAACCACGAAGGCCCCAGGGAAAATGCCTAAGAGTACTAAGAAGTGGGTGACAAAAAATGCAAAGAGACCAACCACTCAACCCCCAGTGATGCCAACCACGAAACACTCCAGGGCCCAAAGCCCCCCAGACCTAACCTCACAGACCACTGCAGCACTGACCACTGAGGCCTCCCGAAGACCTACCTCTGAGTTTACCAGAAGGCCGACCACGGAGGCCCCCCAGAGATGGACCTCTCACACCACTGCCACGCTGACCCCTCAGGCCCCCCGAGAACGGACCACTAAGACCATGGCAATGCTGACCACTCAAGGCCCCCAAGAAATGACCTCTGAGTCCACTATCAAGAGTATCCCTCAGGCCTCCCTGGAGCCATCTGCTGAGATCCCAGAAGGGTCTCCAGAGTCACCCAAAGACCCGGCCCCCTCTCCCAGTGTTAGCACCACTGGGGAATCAG
Seq A exon
GCCTGTTCCGGGTTCGTCTGGCCGATGGGCCCAACCGCTGTGCTGGCCGGCTGGAAGTGTGGCATGCCGGACGCTGGGGAACAGTGTGTGATGACAACTGGGACCTGCGGGACGCCACTGTGGCCTGCTGGGAACTGGGCTGTGGAAAGGTCCGGCCTCGAGTAGGCAAAACCCATTACGGCCCTGGGACTGGGCCCATCTGGCTGGATGACATGGGCTGTAAGGGAAGCGAGGCCTCACTGAGCGACTGCCCCTCGGGGGCTTGGGGGAAGCACAACTGTGACCACGAGGAAGACGTGGGGCTCACCTGCACTG
Seq C2 exon
GCTACACAGACTATGACGATTATCCCCCCTGGACCTGGGACCCCACCTCAAGAGAGGACCTGGCCAAGGGGACTACCACAGCGGGGGTACCTGGACACACTCTCCCCTGGAGGACCACCCGGCGCCCGGGTAGCTCCTCCCCAGCAATAAGGCGCCTGCCGGACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000179954-'15-19,'15-18,16-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.896 A=0.165 C2=0.807
Domain overlap (PFAM):
C1:
NO
A:
PF0053013=SRCR=WD(100=92.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCCGAAGACCTACCTCTG
R:
TTGGCCAGGTCCTCTCTTGAG
Band lengths:
355-670
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains