RnoEX0086278 @ rn6
Exon Skipping
Gene
ENSRNOG00000016687 | Ssc5d
Description
scavenger receptor cysteine rich family member with 5 domains [Source:RGD Symbol;Acc:1565772]
Coordinates
chr1:72451182-72452593:-
Coord C1 exon
chr1:72452030-72452593
Coord A exon
chr1:72451634-72451948
Coord C2 exon
chr1:72451182-72451349
Length
315 bp
Sequences
Splice sites
3' ss Seq
GGGCCTCCCACCACCCCCAGGTC
3' ss Score
7.95
5' ss Seq
CTGGTACCA
5' ss Score
2.73
Exon sequences
Seq C1 exon
AGATCAGGATGCCTGGCTCCCAGGAGAGCTGGCCACCAAGCCTTCTGCCAGTCTCACCTCCAGTGTGCTACAGAAAACCACAAAGGCTCCAGGGAAAGTGCCCAAGAGTACCAAGAAGTGGGTGACTAAAAATGCAAAGAGACCAACCACTCAGCCCCCTGGGATACCAATCACTAAACGCCCCAGGGTCCCAGGCACCCCAACCTCCCTAAGCCCAACCCCACGTACCTCTGAGTTACCAAAGAGACTTACTGCCGAGGCTCCTCGCAGACAGACCTCACACACCACCGAAAGGCTGACCCCTAGGGTCCCCTGGGAGTGGACCTCAGAGACCGCGGCATCACTGTCCACTCAAGGCCCCCAAGAAGTGACCTCTGAGGCCACCACCGCACAAACCCCTCAGACCTCCTTGGAGCCATTTGGTGAGAACCCAGAAGGCTCTCTAGAATCTTCCCAGGATCCAGCTGCCACCCCGACTGCTGGAGTTCCCGTGCCATCGG
Seq A exon
GTCCCTTCCGGGTTCGTCTGGCTGATGGGCCCAACAGGTGTGCTGGCCGGCTAGAGGTGTGGCATGCCGGGCTCTGGGGGACAGTCTGTGATGACAGCTGGGACCTCCGGGATGCCACAGTGGCCTGCTGGGAACTGGGTTGCGGAAAGGTCCGGCCCCGAGTAGGCAAAACCCACTATGGCCCTGGCACTGGGCCCATCTGGTTGGATGACATGGGCTGTAAGGGAAGTGAGACGTCACTGAGTGACTGCCCCTCGGGGACATGGGGGAAGCACAACTGTGACCACGAAGAAGACGTGGTGCTCACCTGCACTG
Seq C2 exon
GCTACACAGGGGATGACGATTACCCTTCCTGGACCTGGGACCCCACTTCGGAAGAGGACCTGACCAAAAGGACCACAGTGGCCACACAGCCTGGACATACACCTTCCTGGGCTACTACCACAAACCCTGAAGTTCTCTCTCCAGCAACGCAGAGCCTTCCAGACATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016687_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.894 A=0.217 C2=0.842
Domain overlap (PFAM):
C1:
NO
A:
PF0053013=SRCR=WD(100=92.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTCACACACCACCGAAAG
R:
GGTAGTAGCCCAGGAAGGTGT
Band lengths:
346-661
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]