GgaEX1002170 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:H9KZK0]
Coordinates
chrLGE64:624067-640771:-
Coord C1 exon
chrLGE64:640466-640771
Coord A exon
chrLGE64:639193-639525
Coord C2 exon
chrLGE64:624067-624396
Length
333 bp
Sequences
Splice sites
3' ss Seq
TCTCTCCCTTTTGCCACCAGAAG
3' ss Score
8.72
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
AGCTGCGCCTGGTGAATGGCTTGAACCGCTGTTCTGGGAGAGTGGAGATACTGTATGATCACCAGTGGGGGACTGTGTGTGATGACGACTGGAGCTTTACTAATGCCAAAGTGGTGTGCCGGCAGCTGGGCTGTGGGGAAGCAGTATCAGCCTATAGCTCGGCACACTTTGGCCAGGGGTCAGGTCCCATTTGGCTAGACAACGTTCAGTGCATTGGGACGGAAACTGCCCTGTCTCAATGTCAGGCCAGGCCACTGGGCTTCAGTAACTGTGACCACGGAGAAGATGCTGGAGTTGTGTGTGCAG
Seq A exon
AAGGGATAATCACCGAAACACCAGCTCAGCTGCGCCTGGTGAATGGCCCCAGCCAGTGCTCAGGACGCGTGGAGGTGCTGCACGACCACCACTGGGGCACAGTGTGTGATGATGACTGGAGTCTGAGCGAGGCCATGGTGGTGTGCCGGCAACTGGGTTGCGGGGCGGCTGTCTCAGCCCCAGGCTCAGCTCACTTTGGGCAAGGCTCTGGCCATATTTGGCTGGATAATGTGAACTGCACAGGTGCAGAAACTGTGCTCTCTGAGTGCCCGAGCAGGCCATGGGGATCCAATGACTGCAGCCACAGGGAGGATGCTGGTGTGGTGTGCTCAG
Seq C2 exon
AATCCCACATCTCCAAGATTGGTCGGCTCCAGCTGCTCGATGGCCCCAGCCGTTGTGCAGGAAGAGTGGAGGTGCTCCATGACCAAAGATGGGGCACCATCTGCGATGATGGCTGGGACCTCGCTGATGCTAATGTGGTGTGCCGGCAACTGGGCTGTGGAACAGCAGTGCTGGCCACTAAAGCAGCTCACTATGGGAGAGGCCAAGATACCATCTGGTTGGATGAGGTGAACTGCACTGGTATGGAGGAATCCATCTTCGACTGCAAGGCAAGTGCATGGGGAGTCAACAACTGCTACCATGGAGAGGATGCTGGAGTGCTATGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009103_MULTIEX1-10/22=9-13
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=95.1)
A:
PF0053013=SRCR=WD(100=87.5)
C2:
PF0053013=SRCR=WD(100=93.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTAGACAACGTTCAGTGCA
R:
CCAGTGCAGTTCACCTCATCC
Band lengths:
355-688
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]