RnoEX6005208 @ rn6
Exon Skipping
Gene
ENSRNOG00000020560 | AABR07005821.1
Description
NA
Coordinates
chr1:201672528-201676860:+
Coord C1 exon
chr1:201672528-201672736
Coord A exon
chr1:201675503-201675826
Coord C2 exon
chr1:201676831-201676860
Length
324 bp
Sequences
Splice sites
3' ss Seq
TGAGTGCCACTTTATCTCAGGAA
3' ss Score
5.23
5' ss Seq
CACGTGAGT
5' ss Score
9.3
Exon sequences
Seq C1 exon
GCTTGAAGGAGGTTGCAACTATGACTACATCCTGGTTTTTGATGGCCCTGAATACAATTCTTCTCTCATTGCTCGGGTTTGTGATGGGTCCAATGGATCTTTCACCTCAACCCAGAACTTCATGTCTGTAGTCTTTATCACGGATGGCAGTGTCACGAGGAGAGGGTTCCAAGCTGACTACTACTCCACTCCTATCAGCACCAGCACAA
Seq A exon
GAAATGATTCTTCATTGGTGTTGAGACTGGTAAATGGAACAAACCGCTGTGAGGGCCGAGTGGAGATCTTGTACAGAGGCTCTTGGGGTACCGTGTGCGACAACAGCTGGGACATCAATGATGCCAATGTGGTCTGCAGACAGCTCGGTTGTGGCTCTGCTCTGTCTGCTCCAGGAAATGCTTGGTTTGGTCAGGGCTCAGGGCTCATTGTCCTGGATGATGTGTCTTGCTCTGGGTATGAGTCTCATCTGTGGAATTGTCGTCACCCTGGCTGGCTTGTCCATAATTGTCGCCATGTTGAGGATGCAGGAGTCATCTGCTCAC
Seq C2 exon
TCCCTGATCCGACTCCCTCTCCTGGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020560-'39-42,'39-41,41-42=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(57.1=84.5)
A:
PF0053013=SRCR=WD(100=89.9)
C2:
PF0053013=SRCR=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTGAAGGAGGTTGCAACTA
R:
CTGGACCAGGAGAGGGAGTC
Band lengths:
239-563
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]