RnoEX6001267 @ rn6
Exon Skipping
Gene
ENSRNOG00000016687 | Ssc5d
Description
scavenger receptor cysteine rich family member with 5 domains [Source:RGD Symbol;Acc:1565772]
Coordinates
chr1:72457228-72459023:-
Coord C1 exon
chr1:72458715-72459023
Coord A exon
chr1:72457908-72458225
Coord C2 exon
chr1:72457228-72457392
Length
318 bp
Sequences
Splice sites
3' ss Seq
CCTCTGTCCTTCCGTTTCAGGTC
3' ss Score
13.67
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
Exon sequences
Seq C1 exon
AGCGGCTGCGTCTGGTCTCAGGTCCCCATGGATGTGCCGGCCGCCTGGAAGTCTGGCACGGTGGACGTTGGGGTACTGTCTGCGATGATGGATGGGACCTCCGAGACGCAGCAGTGGCCTGTAGGGAGCTAGGATGTGGGGGAGCGCTGGCCGCCCCTGGAGGTGCCAGATTCGGACCTGGTGAGGGACCCGTGTGGATGGACGATGTCGGGTGTGGAGGAGGAGAGGAGGCCCTCCGGGACTGTCCCCGAAGCCCCTGGGGCCGGAGCAACTGTGACCACACAGAGGATGCAGGGCTGGTCTGTACTG
Seq A exon
GTCCTGCACCCAGGTTGCGCCTTGCTGATGGTCCCCACGGCTGTGCTGGGCGCCTGGAGGTTTGGCATGGTGGCCGCTGGGGGTCGGTATGTGACGATGCTTGGGATCTTCGTGATGCCGCTGTGGCCTGCAGGGAGCTGGGCTGTGGGGGTGCCCTGGCTGCCCCAGGGGGTGCCTTCTTTGGTGAGGGGGCTGGACCCATCATCCTGGATGACCTCAGATGTCGAGGAAACGAGACAGCCTTACGATTCTGCCCTGCGAGGCCCTGGGGTCAGCATGACTGTCACCATCGGGAGGATGCTGGGGCTGTGTGTGATG
Seq C2 exon
GCATGCCTCTCGGTGGCGATGTGCAGCCTACAGCTCCTGCAGTGGACAGCAACAGAACAACACCCAGGCTCCAGTCTACCTCAGTGGGTCATACGCCAGGCCCAGCAGGCAGTTGGCCTCCTCCTGCTTCTCCTACTGCCCCTCCAGAGCCTGGACCTGAAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016687-'11-7,'11-6,13-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.139 A=0.019 C2=1.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=94.2)
A:
PF0053013=SRCR=WD(100=91.6)
C2:
NO
Main Skipping Isoform:
ENSRNOT00000022480fB14379
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCAGGTCCCCATGGATGTG
R:
GTTCTGTTGCTGTCCACTGCA
Band lengths:
352-670
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]