DreEX6001399 @ danRer10
Exon Skipping
Gene
ENSDARG00000045752 | si:ch211-161n3.4
Description
si:ch211-161n3.4 [Source:ZFIN;Acc:ZDB-GENE-110913-46]
Coordinates
chr4:10943340-10953052:-
Coord C1 exon
chr4:10952750-10953052
Coord A exon
chr4:10946893-10947207
Coord C2 exon
chr4:10943340-10943654
Length
315 bp
Sequences
Splice sites
3' ss Seq
AATTATTTCTCAAACTTTAGACC
3' ss Score
5.64
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
CGTTTAAAGAGATCAGGTTAACTGAAGGCTGTGAAGGGAATGTGGAGGTTTTCTACAATGGATCCTGGGGAAATGTGTGCTGGAATCAGATGGAAATAGACACAGTGAGTATTATTTGTCAAGAGCTGAACTGTGGAAGATCTGGTGTTTTGTCTGTTTCTACATCAAGACTGAAATCAGCTCCTAACTGGCTGGACAAAGTAACATGTCGATCACATGATTCACATCTTTTGCAATGTCCGTCTTCAATTTGGGGACAAAATGACTGTAATACAGATGAAGTGGCCAAAGTTACCTGCTCAG
Seq A exon
ACCTTGTGAATGTGCGCTTGGTTGGTGGTCACAGTCGCTGTGCTGGCACAGTGGAAGTTCTTCATAGAGGTCAGTGGGGAACAGTGTGTGATGATTGCTGGGATTTGGCTGATGCTGCAGTGGTGTGTAGAGAACTGGACTGTGGAGAACCTGTAGATGCTCTGGGTGGAGCTCATTTTGGACCAGGATCAGGACGAGTCTGGACAAGCCATGTCACATGTACTGGATCAGAGTCTACACTGAAGAACTGTGGGTCAGCAGGATGGGGTAAAAGCAGATGTGATCATAGCAGAGATGCTGGAGTCTTATGTTCAG
Seq C2 exon
GAAATGTGGGAGTAAGGTTGGTTGGAGGTACCGACCGCTGTTCTGGTCGAGTGGAGGTTCTTTACAGAGGTCAGTGGGGAACAGTGTGTGACATTGGCTGGGATATGCCAGATGCTACAGTGGTGTGTAGAGAACTGGACTGTGGAGAACCTGTAGATGCTCTGGGTAACGCTCATTTTGGACCAGGATCAGGACCAATCTGGATGAATCGCTTAACATGTTCTGGATCAGAACCAAAGCTGAGGAAATGTGGATCAGTGGAATGGGGTATATATCACTGTGATCATTCTAAAGATGCAGGAGTCATCTGCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045752-'12-22,'12-20,20-22=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=93.1)
A:
PF0053013=SRCR=WD(100=92.5)
C2:
PF0053013=SRCR=WD(100=92.5)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGGAAATGTGTGCTGGAA
R:
ATCCCAGCCAATGTCACACAC
Band lengths:
343-658
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]