GgaEX1043948 @ galGal4
Exon Skipping
Gene
ENSGALG00000009118 | PIT54
Description
PIT54 protein precursor [Source:RefSeq peptide;Acc:NP_997063]
Coordinates
chrLGE64:548406-550186:+
Coord C1 exon
chrLGE64:548406-548735
Coord A exon
chrLGE64:549194-549523
Coord C2 exon
chrLGE64:549857-550186
Length
330 bp
Sequences
Splice sites
3' ss Seq
CCTATTTATTCCATTTTTAGGGA
3' ss Score
9.52
5' ss Seq
CAGGTAATC
5' ss Score
6.99
Exon sequences
Seq C1 exon
AAGATGTAGATACCAGTACACCTGAGGTTCGCCTGGTGGATGGTCCAAACAGATGCTCTGGAAGAGTCGAGGTGCTTCACAATGATGTCTGGGGGACTGTTTGTGATGAAGGTTGGGATTTACGGGAGGCCAGGGTGGTGTGCAGGCAGCTGGGCTGTGGGACAGCATTATCATCCCCCAAGAAGTCAAAATATGGAGAAGGGAAGGGCCAGATCTGGCTGAGTGATTTGGACTGCAAAGGGACAGAAGGGTCCCTCTCCAACTGCAAGTCGAAGCCATGGGGAGAAAACATCTGCAACCATGTGGAAGATGCCAGCGTGGAATGCTCAG
Seq A exon
GGACAGAAATACCTGAGCCAGGGCCACTTCGTCTCGTGGGAGGCCCAAACCGATGTGCTGGAAGAGTCGAGGTTCTTCACGAAGAGCAGTGGGGCAGCGTGTGCCATGATGAATGGGATATCAATGATGCTCAAGTTGTGTGCAAGCAACTGGGTTGTGGGGATGCAGTGCTGGCCCCAATTGCAGCAAAGTTCGGGCGAGGAACTGACACCATCTGGCTGGATGACGTGAACTGCACAGGGTCGGAAGCATCTCTCTCTGAATGCCAGGCAAGGCCGTGGGGGGACCACAATTGTTATCACGGGGAAGATGCCAGTGCAATTTGTTCAG
Seq C2 exon
ATTCGGGGATCAGCATCTCCACTTCAGTTCGCCTGGTAGGAGGCCCCAACCGCTGCTCTGGAAGAGTTGAGGTGCTTCACAACAATGTCTGGGGGACTGTGTGTGATGACAACTGGGATTTACGGGAGGCTAAAGTGGTGTGCAAACAGCTGGGCTGTGGGACAGCCCTATCAGCCCTGCCGGAGTCAAAATATGGAGAAGGAAAAGGCCAAATTTGGCTGAGCGATTTGAACTGCACAGGGACAGAAGGATCTCTCACTGAATGTGAAGCAAAGCCATGGGGAGAGAATGTCTGCAATCATGTAGAAGATGCCAGTGTGGAGTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009118-'3-8,'3-5,5-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=88.3)
A:
PF0053013=SRCR=WD(100=88.3)
C2:
PF0053013=SRCR=WD(100=88.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGCAAAGGGACAGAAGGG
R:
CCTTCTGTCCCTGTGCAGTTC
Band lengths:
350-680
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]