MmuEX6008298 @ mm9
Exon Skipping
Gene
ENSMUSG00000035279 | A430110N23Rik
Description
RIKEN cDNA A430110N23 gene [Source:MGI Symbol;Acc:MGI:3606211]
Coordinates
chr7:4879498-4881156:+
Coord C1 exon
chr7:4879498-4879611
Coord A exon
chr7:4879987-4880295
Coord C2 exon
chr7:4880839-4881156
Length
309 bp
Sequences
Splice sites
3' ss Seq
CTCCCCCCACCCCTCCCCAGAGC
3' ss Score
9.12
5' ss Seq
CCGGTATGT
5' ss Score
9.2
Exon sequences
Seq C1 exon
CTCCCCAACCAGCAGCAAGCTCCCAGAATGGCCCCCGGAAGAAGAACCCCCGGCCACCCAAGCAGACCAAGTCCACCCGAGCCCCTGTACTGACAAATGGAGCTCCCCACCAAG
Seq A exon
AGCGGCTGCGACTGGTCTCAGGTCCCCACGGATGTGCCGGCCGCCTGGAAGTCTGGCACGGTGGACGTTGGGGCACTGTCTGTGATGATGGATGGGACCTCCGAGATGCAGCGGTGGCCTGCAGGGAGCTGGGATGTGGGGGAGCGCTGGCCGCCCCTGGGGGTGCCAGATTTGGACCTGGTGAGGGACCTGTGTGGATGGATGACGTGGGGTGTGGAGGAGGAGAGGAGGCCCTCCGAGACTGTCCCCGAAGCCCCTGGGGCCGGAGCAACTGTGACCACACCGAGGATGCAGGGCTGGTCTGCACCG
Seq C2 exon
GTCCTGCACCCAGGATACGCCTTGCTGATGGTCCCCACGGCTGTGCTGGCCGCCTGGAGGTGTGGCATGGTGGACGATGGGGGTCGGTGTGTGACGATGCCTGGGATCTTCGCGATGCTGCTGTGGCCTGCAAGGAGCTGGGCTGTGGGGGTGCCCTGGCCGCCCCAGGGGGCGCCTTCTTTGGAGAGGGGACTGGACCCATCATCCTGGATGATCTCAGATGTCGAGGAAATGAGACAGCCTTGCGATTCTGTCCTGCGAGGCCCTGGGGTCAGCACGACTGTCACCACCGGGAGGATGCTGGGGCCGTGTGTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035279-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.192 C2=0.009
Domain overlap (PFAM):
C1:
NO
A:
PF0053013=SRCR=WD(100=94.2)
C2:
PF0053013=SRCR=WD(100=91.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAAGCTCCCAGAATGGC
R:
CGCAAGGCTGTCTCATTTCCT
Band lengths:
349-658
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: