RnoEX6001266 @ rn6
Exon Skipping
Gene
ENSRNOG00000016687 | Ssc5d
Description
scavenger receptor cysteine rich family member with 5 domains [Source:RGD Symbol;Acc:1565772]
Coordinates
chr1:72457908-72459494:-
Coord C1 exon
chr1:72459381-72459494
Coord A exon
chr1:72458715-72459023
Coord C2 exon
chr1:72457908-72458225
Length
309 bp
Sequences
Splice sites
3' ss Seq
TCCCTGTCTGCACCCCCCAGAGC
3' ss Score
7.91
5' ss Seq
CTGGTATGT
5' ss Score
8.14
Exon sequences
Seq C1 exon
CTCCCCAGCCGGCAGCAAGCTCCCAGAATGGCCCCCGAAAGAAGAACCCCCGGCCACCCAAGCAGGTCAAGTCCACCCGAGCCCCTGTACTGACAAATGGAGCTCCCCGCCAAG
Seq A exon
AGCGGCTGCGTCTGGTCTCAGGTCCCCATGGATGTGCCGGCCGCCTGGAAGTCTGGCACGGTGGACGTTGGGGTACTGTCTGCGATGATGGATGGGACCTCCGAGACGCAGCAGTGGCCTGTAGGGAGCTAGGATGTGGGGGAGCGCTGGCCGCCCCTGGAGGTGCCAGATTCGGACCTGGTGAGGGACCCGTGTGGATGGACGATGTCGGGTGTGGAGGAGGAGAGGAGGCCCTCCGGGACTGTCCCCGAAGCCCCTGGGGCCGGAGCAACTGTGACCACACAGAGGATGCAGGGCTGGTCTGTACTG
Seq C2 exon
GTCCTGCACCCAGGTTGCGCCTTGCTGATGGTCCCCACGGCTGTGCTGGGCGCCTGGAGGTTTGGCATGGTGGCCGCTGGGGGTCGGTATGTGACGATGCTTGGGATCTTCGTGATGCCGCTGTGGCCTGCAGGGAGCTGGGCTGTGGGGGTGCCCTGGCTGCCCCAGGGGGTGCCTTCTTTGGTGAGGGGGCTGGACCCATCATCCTGGATGACCTCAGATGTCGAGGAAACGAGACAGCCTTACGATTCTGCCCTGCGAGGCCCTGGGGTCAGCATGACTGTCACCATCGGGAGGATGCTGGGGCTGTGTGTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016687-'9-6,'9-4,11-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.139 C2=0.019
Domain overlap (PFAM):
C1:
NO
A:
PF0053013=SRCR=WD(100=94.2)
C2:
PF0053013=SRCR=WD(100=91.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGGCCCCCGAAAGAAGAAC
R:
GGGCAGAATCGTAAGGCTGTC
Band lengths:
344-653
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]