BtaEX6084148 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000030885 | SSC5D
Description
scavenger receptor cysteine rich family, 5 domains [Source:HGNC Symbol;Acc:HGNC:26641]
Coordinates
chr18:62466070-62469149:-
Coord C1 exon
chr18:62469036-62469149
Coord A exon
chr18:62468397-62468705
Coord C2 exon
chr18:62466070-62466387
Length
309 bp
Sequences
Splice sites
3' ss Seq
CCCTCCCGCCCGCCCCGCAGAGC
3' ss Score
10.87
5' ss Seq
CAGGTACGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
CACCCCGCCCAGCCGGGACCCCCCAGAGTGGCTCCCGGAAGAAGAGCCCCCGGCTGCCCAAGCCGGCCAAGTCCACCAGGGCCCCAGTGCTGACTGCCGGAGCCCCCCGCCAGG
Seq A exon
AGCGGCTGCGCCTGGTCTCCGGCCCCCACGGGTGCGCCGGGCGCCTGGAGGTGTGGCATGGCGGGCGCTGGGGCACCGTGTGCGACGACGGCTGGGACCTGCGGGACGCCGCCGTGGCCTGTCGGGAGCTGGGCTGCGGGGGCGCCCTGGCCGCCCCTGGGGGGGCCCGGTTCGGCCCGGGCGCGGGGCCCGTGTGGATGGACGACGTGGGTTGCGGAGGCGGAGAGCAGGCCCTGAGAGACTGTCCCCGAAGCCCCTGGGGCCGGAGCAACTGCGACCACAGCGAGGACGCAGGACTGGTCTGCACAG
Seq C2 exon
GCCCGGCCCCCCGGCTGCGTCTGGCCGATGGCCCCCACGGGTGTGCTGGCCGCCTGGAGGTGTGGCACGGCGGGCGCTGGGGCACCGTGTGCGATGATGGCTGGGACCTGCGGGACGCCGCCGTGGCCTGCCGGGAGCTGGGCTGCGGGGGCGCGCTGGCCGCCCCCGGGGGCGCCTTCTTCGGGGAGGGCGCGGGGCCCATCCTTCTGGACGACCTCCGCTGTCGGGGGAACGAGACGGCCTTGCGGTTCTGTCCGGCGCGGCCCTGGGGCCAGCACGACTGCCACCACCGGGAGGACGCCGGGGCCGTGTGTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030885-'4-7,'4-5,5-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.115 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0053013=SRCR=WD(100=94.2)
C2:
PF0053013=SRCR=WD(100=91.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGCCGGCCAAGTCCAC
R:
CTCCCGGTGGTGGCAGTC
Band lengths:
352-661
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]