HsaEX6096829 @ hg19
Exon Skipping
Gene
ENSG00000179954 | AC008735.1
Description
scavenger receptor cysteine rich domain containing (5 domains) [Source:HGNC Symbol;Acc:26641]
Coordinates
chr19:56001665-56005279:+
Coord C1 exon
chr19:56001665-56001775
Coord A exon
chr19:56002139-56002447
Coord C2 exon
chr19:56004962-56005279
Length
309 bp
Sequences
Splice sites
3' ss Seq
CCTCCCTGCTCACCCCACAGAGC
3' ss Score
10.69
5' ss Seq
CCGGTACGT
5' ss Score
10.49
Exon sequences
Seq C1 exon
CCCCCCGCCCAGCTGGGAACCCCCAGAACGCCTCCCGGAAGAAGAGCCCCCGGCCCAAGCAGGCCAAGTCCACCCGGGCCCCTCTGCTGACGACAGGAGCCCCCCGCCAAG
Seq A exon
AGCGGCTGCGCCTGGTCTCTGGCCCCCACAGGTGCGCCGGACGCCTGGAGGTCTGGCACGGCGGGCGCTGGGGCACCGTATGTGACGATGGCTGGGACCTGCGCGACGCTGCTGTAGCCTGCCGGGAACTGGGCTGTGGGGGGGCGCTGGCTGCCCCCGGCGGTGCCAGATTCGGGCCTGGTGCAGGGCCCGTGTGGATGGACGATGTGGGGTGTGGAGGAGGAGAACAGGCCCTCCGAGACTGCCCCCGAAGCCCCTGGGGCCGGAGCAACTGTGACCACAGCGAGGATGCGGGGCTGGTCTGCACCG
Seq C2 exon
GCCCAGCACCTCGGCTGCGCCTGGCCGATGGCCCCCACGGGTGCGCCGGCCGCCTGGAGGTCTGGCACGGGGGTCGCTGGGGGTCGGTGTGTGACGACGCCTGGGACCTGCGAGACGCCGCTGTGGCCTGCCGAGAGCTGGGCTGCGGAGGGGCGCTGGCCGCCCCCGGGGGCGCCTTCTTTGGGGAGGGGTCTGGACCCATCATCCTGGACGACCTTCGGTGTCGGGGAAACGAGACGGCCTTACGATTCTGCCCAGCTCGGCCCTGGGGCCAGCATGACTGTCACCACCGCGAGGACGCCGGGGCCGTGTGTGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000179954-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.096 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0053013=SRCR=WD(100=94.2)
C2:
PF0053013=SRCR=WD(100=91.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACGCCTCCCGGAAGAAGAG
R:
CGAGCTGGGCAGAATCGTAAG
Band lengths:
348-657
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)