GgaEX7012059 @ galGal4
Exon Skipping
Gene
ENSGALG00000027253 | SBK3
Description
SH3 domain binding kinase family, member 3 [Source:HGNC Symbol;Acc:HGNC:44121]
Coordinates
chrLGE64:686404-692147:-
Coord C1 exon
chrLGE64:691836-692147
Coord A exon
chrLGE64:691184-691500
Coord C2 exon
chrLGE64:686404-686599
Length
317 bp
Sequences
Splice sites
3' ss Seq
TCATTGCTGTGTTCCCACAGAGC
3' ss Score
10.89
5' ss Seq
CAGGTGTGG
5' ss Score
6.34
Exon sequences
Seq C1 exon
TTCCTGCCCGGCTCTCCGGCAGCCACTCCCCATGCCAGGGCCGCGTGGAGCTGCTGCAGGACGGCACCTGGGCCTCGGTCTGCGCCATGGGCTGGGACCTTGCAGCTGCCCACGTCCTGTGTCGCCAGCTGGGCTGCGGGCGCCCCCGAGCCGTCCCAGTGCCCTGCAGCCCTCCCATGGCTGAGGGGAACGTGGTGGGTCTGCGTCAGGTGCTGTGTGCAGGGCAGGAGCTGGACTTGGAGCACTGCAAGCTGCAGCCCGGTGACGCTGCATCTTGTCCCTCCAACCATGTGGCTGCTGTCAACTGCGAGG
Seq A exon
AGCCCTTCAGGCTGCGGCTGGCTGACGGGCCCAGGCGCTGTGCGGGGCGGCTGGAGGTGCAGCGAGCCGGGCGCTGGGGCACGGTGTGTGATGACGGATGGAGCAGGGCCAACATGGCTGTGGTATGCCAGGAGCTGGGCTGCGGCGAGGCGCAGGACCTGGATGGGGAGCGGCCACGTTTTGGGCCTGGTGTCGGGCACATCTGGCTGGATGACGTCCGATGCCAAGGGCAGGAGAAGAGCCTGCAGGACTGCGCACACCGTGTGTGGGGATACCATGACTGCACCCACCACGAGGACATTGGAGTTGTATGCCAG
Seq C2 exon
CATGGTGCTGGGCTCTGCAGGGCCATGGCAGAGCCGGAGGAGGATGAGGAGGACAACGCGGCAGCTTTGGAGCAGCTGATGGCGCAGGCAGGCCGGGCACTGCAGTGGCAGGAGCTGGAGGAGCAGTTCTGCGTGCTGGCCGAGCTGGGCAGTGGCACCTATGGCCATGTGGTGCTCACTGAGCCTCGGGATGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027253-'3-5,'3-2,4-5=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.276
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0006920=Pkinase=PU(8.6=39.7)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCACTCCCCATGCCAG
R:
CGTTGTCCTCCTCATCCTCCT
Band lengths:
350-667
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]