HsaEX6064964 @ hg38
Exon Skipping
Gene
ENSG00000177675 | CD163L1
Description
CD163 molecule like 1 [Source:HGNC Symbol;Acc:HGNC:30375]
Coordinates
chr12:7375700-7379266:-
Coord C1 exon
chr12:7379237-7379266
Coord A exon
chr12:7378978-7379109
Coord C2 exon
chr12:7375700-7376014
Length
132 bp
Sequences
Splice sites
3' ss Seq
CAGAGAGCCTCATTTCACAGAAA
3' ss Score
1.83
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
GGAAGCAGCAGGTGTGCTGGAAAAGTTGAG
Seq A exon
AAAGAACATTACACATCTTAATGTCGAATTCTGGCTGCACTGGAGGGGAAGCCTCTCTCTGGGATTGTATACGATGGGAGTGGAAACAGACTGCGTGTCATTTAAATATGGAAGCAAGTTTGATCTGCTCAG
Seq C2 exon
CCCACAGGCAGCCCAGGCTGGTTGGAGCTGATATGCCCTGCTCTGGACGTGTTGAAGTGAAACATGCAGACACATGGCGCTCTGTCTGTGATTCTGATTTCTCTCTTCATGCTGCCAATGTGCTGTGCAGAGAATTAAACTGTGGAGATGCCATATCTCTTTCTGTGGGAGATCACTTTGGAAAAGGGAATGGTCTAACTTGGGCCGAAAAGTTCCAGTGTGAAGGGAGTGAAACTCACCTTGCATTATGCCCCATTGTTCAACATCCGGAAGACACTTGTATCCACAGCAGAGAAGTTGGAGTTGTCTGTTCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177675-'25-28,'25-27,26-28
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0053013=SRCR=WD(100=90.7)
C2:
PF0053013=SRCR=WD(100=92.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTGTGCTGGAAAAGTTGA
R:
TCACACTGGAACTTTTCGGCC
Band lengths:
245-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains