GgaEX7005819 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NV85]
Coordinates
chr7:6899882-6901794:+
Coord C1 exon
chr7:6899882-6899948
Coord A exon
chr7:6900159-6900479
Coord C2 exon
chr7:6901486-6901794
Length
321 bp
Sequences
Splice sites
3' ss Seq
TCCGATGTTAATGTTTGAAGGGG
3' ss Score
2.69
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
ATGGGGACAGAGGGACTCCTGTCATCTCGGGTGCTATGGCTGCTCCTCTTTGTGCAGCCATGCAGAG
Seq A exon
GGGTTGCGGAGGTGAGGCTGGCAAATGGCAATGGCGGTGTGCACTGTGCTGGGAGAGTGGAGGTGAAATACGACAATGAGTGGGGGACCGTGTGTGACGACTCATGGGACATGAACGACGCTGAAGTGGTTTGCAAGCAGCTGAACTGCGGGTCTGCTATAGAAGCTCCTCACTATGGACACTTTGGACCAGGATCTGGCCCCATTTGGATGGATGATGTTAACTGTAGTGGCTCTGAGTCTGCACTGTCTGACTGCACACATGCAGGATGGAATAAACATAACTGTTATCACAGTGAGGATGCTGGAGTTACATGTTCAG
Seq C2 exon
GACCTATTCGGCTTGTTGGAGGCGACAGTGACTGCTCAGGTCATGTGGAAATCCATGATGGAAAACAGTGGAGATCTGTCTGTGACTCACACTTTGGTCCCAAAGCTGCCGATGTTGTCTGCAGGGATTTGCTGTGTGGCAAAGCCCTGCTGTTACCCAGAGCAACTCCTTTGGATGAAGAAGTCAGTCCCATCTGTGACAGAGATCTGCAGTATGTGATGAATGCATCTGTCCTCATCTCCTGCCTCAAGGAATCCTCCATCAACCATCCCTGCGCCCACGCAAATGGCACTCACATCACCTGCACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002213-'0-1,'0-0,1-1=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0053013=SRCR=WD(100=90.7)
C2:
PF0053013=SRCR=WD(100=94.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTGTCATCTCGGGTGCTA
R:
TGATGTGAGTGCCATTTGCGT
Band lengths:
352-673
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]