MmuEX6015049 @ mm10
Exon Skipping
Gene
ENSMUSG00000054672 | 5830411N06Rik
Description
RIKEN cDNA 5830411N06 gene [Source:MGI Symbol;Acc:MGI:2443685]
Coordinates
chr7:140273992-140297641:+
Coord C1 exon
chr7:140273992-140274133
Coord A exon
chr7:140294659-140294973
Coord C2 exon
chr7:140295840-140297641
Length
315 bp
Sequences
Splice sites
3' ss Seq
CTTCATTTGTCTGTCCTAAGGTC
3' ss Score
9.31
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
TGGTCCAAAACTCACCAGGGAAGTCAAGAACAGAAATTCGTGTCTTGCCAAGGAACAGAGGCTGACATTTTCTACTGCAAGATCAATGTGAACTTTGCAGAGCAGTGCGACCTTCAATCTTACACCCAGGTGGTGTGCACAG
Seq A exon
GTCACGTGGAAGCCCGGCTGCTAGGTGGTGTACACCCCTGTGAAGGACGCCTAGAGGTTCTTAGAGGACTTACCTGGGGCACTGTCTGCCATGATGACCTGGACCTGCCCATGGCCCACGTGGTTTGTAGGGAGCTGGGGTGTGGCACTGCTGTATCCATACTCGGGAGTTCCCACTTTGGCTATGGATCAGGGCCTTTGTGGACAGAGGCCTTTCGCTGTATGGGCAACGAATCACTGCTGTTCCATTGTCTGAGGGAACCTGGACACCAGTGTGGCCATGATCAGGATGCTGCACTAATCTGCTCAGGGGAAA
Seq C2 exon
AGTTCCGACTGGTCAATGGCAGCAGCCGCTGTGAGGGCCGCGTGGAGCTTTTGGTACAGGATGCCTGGCAACCCCTCTGTGCTGCCAACTGGGACTTAGCAGATGCCACTGTGCTCTGCCACCAGCTCAACTGTGGCTATGCAGTGGCCACACCGCAAGGAGGCCACTTTGGAAATGTGGAAGGTCCCATCAGGACAGATGTGTTTCACTGTGTGGGAACAGAGCCCCACTTACTGAGCTGCCCAACAAGCACCTTAGGGGCCCAGGCATGCGCACTGGGGAATTCAGCCTCGGCTCTCTGCTCAGGTGAGTGCAGGCAGCCTTGAGACTGCGAAGAAGAAGGTAAACAGGACGAAGGTAAACAGTATGAGAGATTTGGGAGGGTGAGGATAGGTGGAGATGTTCGGAGCGATGGTCCTCTGCCCATCAGAGTTTCTCCCTGTCAGGTCTCCAGGATGCCCTTCGGCTGAGGGAGGGACAGAGTCACTGTGATGGCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054672-'8-8,'8-7,10-8
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0053013=SRCR=WD(100=90.6)
C2:
PF0053013=SRCR=WD(100=95.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGTCTTGCCAAGGAACAGA
R:
GCTTGTTGGGCAGCTCAGTAA
Band lengths:
355-670
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types