BtaEX0034642 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000030885 | SSC5D
Description
scavenger receptor cysteine rich family, 5 domains [Source:HGNC Symbol;Acc:HGNC:26641]
Coordinates
chr18:62465645-62468705:-
Coord C1 exon
chr18:62468397-62468705
Coord A exon
chr18:62466070-62466387
Coord C2 exon
chr18:62465645-62465821
Length
318 bp
Sequences
Splice sites
3' ss Seq
TCCCCCGCCTCCACGTCCAGGCC
3' ss Score
8.07
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
Exon sequences
Seq C1 exon
AGCGGCTGCGCCTGGTCTCCGGCCCCCACGGGTGCGCCGGGCGCCTGGAGGTGTGGCATGGCGGGCGCTGGGGCACCGTGTGCGACGACGGCTGGGACCTGCGGGACGCCGCCGTGGCCTGTCGGGAGCTGGGCTGCGGGGGCGCCCTGGCCGCCCCTGGGGGGGCCCGGTTCGGCCCGGGCGCGGGGCCCGTGTGGATGGACGACGTGGGTTGCGGAGGCGGAGAGCAGGCCCTGAGAGACTGTCCCCGAAGCCCCTGGGGCCGGAGCAACTGCGACCACAGCGAGGACGCAGGACTGGTCTGCACAG
Seq A exon
GCCCGGCCCCCCGGCTGCGTCTGGCCGATGGCCCCCACGGGTGTGCTGGCCGCCTGGAGGTGTGGCACGGCGGGCGCTGGGGCACCGTGTGCGATGATGGCTGGGACCTGCGGGACGCCGCCGTGGCCTGCCGGGAGCTGGGCTGCGGGGGCGCGCTGGCCGCCCCCGGGGGCGCCTTCTTCGGGGAGGGCGCGGGGCCCATCCTTCTGGACGACCTCCGCTGTCGGGGGAACGAGACGGCCTTGCGGTTCTGTCCGGCGCGGCCCTGGGGCCAGCACGACTGCCACCACCGGGAGGACGCCGGGGCCGTGTGTGATG
Seq C2 exon
GTATGCCTCTCGGGTATGTCCCTCCCACGGCCCCCGCGGCAGGCAGCAACAGCTCAGGGCCCAGGGGGGCCCCATCCAGGTCCCCGCCCCCCACGGCGAGCCAGGCCCCGCAGATGCCCGGTGTCTCAGTTCCGCCCGCCCCCCCGACTTTCCTTCAGGAGCCTGGGCCGGATGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030885-'5-9,'5-7,6-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.115 A=0.000 C2=0.883
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=94.2)
A:
PF0053013=SRCR=WD(100=91.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCGGGAGCTGGGCTG
R:
CAGGCTCCTGAAGGAAAGTCG
Band lengths:
356-674
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development