GgaEX1043949 @ galGal4
Exon Skipping
Gene
ENSGALG00000009118 | PIT54
Description
PIT54 protein precursor [Source:RefSeq peptide;Acc:NP_997063]
Coordinates
chrLGE64:549194-551029:+
Coord C1 exon
chrLGE64:549194-549523
Coord A exon
chrLGE64:549857-550186
Coord C2 exon
chrLGE64:550700-551029
Length
330 bp
Sequences
Splice sites
3' ss Seq
CTCTCTGGATTTGTCCACAGATT
3' ss Score
10.14
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
GGACAGAAATACCTGAGCCAGGGCCACTTCGTCTCGTGGGAGGCCCAAACCGATGTGCTGGAAGAGTCGAGGTTCTTCACGAAGAGCAGTGGGGCAGCGTGTGCCATGATGAATGGGATATCAATGATGCTCAAGTTGTGTGCAAGCAACTGGGTTGTGGGGATGCAGTGCTGGCCCCAATTGCAGCAAAGTTCGGGCGAGGAACTGACACCATCTGGCTGGATGACGTGAACTGCACAGGGTCGGAAGCATCTCTCTCTGAATGCCAGGCAAGGCCGTGGGGGGACCACAATTGTTATCACGGGGAAGATGCCAGTGCAATTTGTTCAG
Seq A exon
ATTCGGGGATCAGCATCTCCACTTCAGTTCGCCTGGTAGGAGGCCCCAACCGCTGCTCTGGAAGAGTTGAGGTGCTTCACAACAATGTCTGGGGGACTGTGTGTGATGACAACTGGGATTTACGGGAGGCTAAAGTGGTGTGCAAACAGCTGGGCTGTGGGACAGCCCTATCAGCCCTGCCGGAGTCAAAATATGGAGAAGGAAAAGGCCAAATTTGGCTGAGCGATTTGAACTGCACAGGGACAGAAGGATCTCTCACTGAATGTGAAGCAAAGCCATGGGGAGAGAATGTCTGCAATCATGTAGAAGATGCCAGTGTGGAGTGCTCAG
Seq C2 exon
AGACAGATATTTCTGAGATTGGACCAGTTCGGCTTGTGGATGGCCCAAACCAATGTGCTGGAAGAGTTGAGGTGTTCCACGAGAATCGTTGGGGTAGTGTGTGTGATGACAATTGGGATATGAAGGATGCCAAGGTGGTTTGCAAGCAGGTGGGCTGCGGCTCACCGCTGTCAGCCTTGGGAAGTGCCCGCTATGGTAGAGGGCCAGATGTCATCTGGCTGGATGATGTGAATTGCGAGGGGACAGAAGAAAGCATCTTTGACTGTAAGGCAAGGCCGTGGGGTGAACACAACTGCTATCATGGAGAGGACGCTTCTGTTTTCTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009118-'5-9,'5-8,7-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=88.3)
A:
PF0053013=SRCR=WD(100=88.3)
C2:
PF0053013=SRCR=WD(100=88.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATCACGGGGAAGATGCCAGT
R:
ACAGAAGCGTCCTCTCCATGA
Band lengths:
353-683
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]