BtaEX6084150 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000030885 | SSC5D
Description
scavenger receptor cysteine rich family, 5 domains [Source:HGNC Symbol;Acc:HGNC:26641]
Coordinates
chr18:62462011-62465821:-
Coord C1 exon
chr18:62465645-62465821
Coord A exon
chr18:62465109-62465426
Coord C2 exon
chr18:62462011-62462580
Length
318 bp
Sequences
Splice sites
3' ss Seq
TCTGTGTCTCCCCCCTCCAGGAT
3' ss Score
12.91
5' ss Seq
CGGGTGAGG
5' ss Score
8.48
Exon sequences
Seq C1 exon
GTATGCCTCTCGGGTATGTCCCTCCCACGGCCCCCGCGGCAGGCAGCAACAGCTCAGGGCCCAGGGGGGCCCCATCCAGGTCCCCGCCCCCCACGGCGAGCCAGGCCCCGCAGATGCCCGGTGTCTCAGTTCCGCCCGCCCCCCCGACTTTCCTTCAGGAGCCTGGGCCGGATGCCG
Seq A exon
GATCCCCCCAGCTGCGCCTGGTGGCGGGGCCCAGCAGGTGCTCGGGCCGGCTGGAGGTGTGGCATGCAGGACGCTGGGGGACTGTGTGTGATGATGGCTGGGACCTGCGGGACACAGCCGTGGTCTGCCGGGAGCTGGGCTGCGGGGGACCGCGGCAGTCTGACCCCACTGCCGGCCGCTTTGGCTGGGGCGCCGGCCCCATCTGGCTGGACGATGTGAGGTGCACGGGGACCGAGGCTGCCCTGGCCGACTGCCTCGCCGCTCCCTGGGGGAAGCACAACTGTGCCCACAATGAGGACGTTGGAGTCACCTGCGCGG
Seq C2 exon
GAACCCCCGGCCTGGACTCCATCTCAGACCCCTTCAGTTGGAGCTGGATCCCCGGCCTGGGCAGAGACCCGGACGCCTGGCTCCCGGGGGAGCTGGCCACCAAGCCATCTGCGAGGCAGACCCCCAGCATCCCTGAGAAAACCACCAAGGCCCCAGGGAAGATGCCCAAAAGCACCAAGAAGTGGGTGACCAAGAACGCAAAGAGACCAACCACTCAGCCCCCGGCGATGCCAACCACTAAGCACTCCAGGGTCTCAGGAACCCAGAGTCCCCCTGAACTGACCTCACGGACCACCAGCACCCTGGCCACGGGGGCCTCCCGAAGACCCACCTCTGAGTTTACCACCAGGCTGACCACGCAGGCCCCCCGCAGGCTGACCTCACACACCACCGTAACTCGGACTTCTCGAGCCCCCAGGGAACGGACCTCTAAGACTGTGGCGACGCTCGCCACCCAGGGCCCCCGATTAGTGACCTCCGAGGCCACCGTGGAGCCATCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030885-'7-11,'7-10,8-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.883 A=0.252 C2=0.890
Domain overlap (PFAM):
C1:
NO
A:
PF0053013=SRCR=WD(100=92.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATGCCTCTCGGGTATGTCC
R:
TGCTTTTGGGCATCTTCCCTG
Band lengths:
351-669
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]