RnoEX0086273 @ rn6
Exon Skipping
Gene
ENSRNOG00000016687 | Ssc5d
Description
scavenger receptor cysteine rich family member with 5 domains [Source:RGD Symbol;Acc:1565772]
Coordinates
chr1:72452030-72457392:-
Coord C1 exon
chr1:72457228-72457392
Coord A exon
chr1:72455278-72455595
Coord C2 exon
chr1:72452030-72452593
Length
318 bp
Sequences
Splice sites
3' ss Seq
GGCTTTTTTTTTTCTTCCAGGGT
3' ss Score
10.63
5' ss Seq
CCGGTGAGG
5' ss Score
9.35
Exon sequences
Seq C1 exon
GCATGCCTCTCGGTGGCGATGTGCAGCCTACAGCTCCTGCAGTGGACAGCAACAGAACAACACCCAGGCTCCAGTCTACCTCAGTGGGTCATACGCCAGGCCCAGCAGGCAGTTGGCCTCCTCCTGCTTCTCCTACTGCCCCTCCAGAGCCTGGACCTGAAGCTG
Seq A exon
GGTCCCCCCAGTTGCGCCTGGTGGCTGGACCCAGCAGGTGCTCTGGTCGGCTGGAGGTATGGCATGATGGACGCTGGGGGACAGTATGTGATGACAGCTGGGACATGAGAGACTCAGCTGTGGTCTGCCGGGAGCTGGGCTGTGGGGGGCCCCGACAGCCAGACCCTGCAGCAGGCCGCTTTGGCTGGGGCGCAGGCCCCATCTGGCTGGATGATGTAGGTTGTGTGGGGACGGAGGCTTCACTGTCAGAATGCCCTGCTGCTTCCTGGGGGAAACACAATTGCGCCCACAATGAGGATGTCGGGGTTACCTGCACCG
Seq C2 exon
GGACCCCCGGCCTGGACACCATCTCAGACCCTTTCAGTTGGAGCTGGCTCCCTGGGCTGGGTAGAGATCAGGATGCCTGGCTCCCAGGAGAGCTGGCCACCAAGCCTTCTGCCAGTCTCACCTCCAGTGTGCTACAGAAAACCACAAAGGCTCCAGGGAAAGTGCCCAAGAGTACCAAGAAGTGGGTGACTAAAAATGCAAAGAGACCAACCACTCAGCCCCCTGGGATACCAATCACTAAACGCCCCAGGGTCCCAGGCACCCCAACCTCCCTAAGCCCAACCCCACGTACCTCTGAGTTACCAAAGAGACTTACTGCCGAGGCTCCTCGCAGACAGACCTCACACACCACCGAAAGGCTGACCCCTAGGGTCCCCTGGGAGTGGACCTCAGAGACCGCGGCATCACTGTCCACTCAAGGCCCCCAAGAAGTGACCTCTGAGGCCACCACCGCACAAACCCCTCAGACCTCCTTGGAGCCATTTGGTGAGAACCCAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016687-'14-10,'14-8,17-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.280 C2=0.894
Domain overlap (PFAM):
C1:
NO
A:
PF0053013=SRCR=WD(100=92.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACAGAACAACACCCAGGCT
R:
AGTGATTGGTATCCCAGGGGG
Band lengths:
355-673
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]