HsaEX0000976 @ hg19
Exon Skipping
Gene
ENSG00000179954 | AC008735.1
Description
scavenger receptor cysteine rich domain containing (5 domains) [Source:HGNC Symbol;Acc:26641]
Coordinates
chr19:56005977-56011779:+
Coord C1 exon
chr19:56005977-56006150
Coord A exon
chr19:56009247-56009564
Coord C2 exon
chr19:56011183-56011779
Length
318 bp
Sequences
Splice sites
3' ss Seq
TTGGGTCTCTTCTACCCCAGGGT
3' ss Score
7.45
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
Exon sequences
Seq C1 exon
GCATGCCCCTGGGCTACGTCCCTCCCACGGCCCCCACGGACAGCAACAACTCCACGCCCAGGGAGGCTGCCTCCAGGCCCCCGTCCACCATGACGAGCCAGGCTCCAGGGACGGCAGGCGTTTCACCTCCTCCAGCCTCCCCTACTGTCCTTTGGGAGCCTGGACCGGAAGCCG
Seq A exon
GGTCCCCCCAGCTGCGCCTGGTGGCTGGGCCCAGCAAGTGCTCAGGTCGACTGGAGGTGTGGCATGACCAGCGCTGGGGGACCGTGTGTGACGATAGCTGGGACATGCGGGATTCAGCTGTGGTCTGCCGGGAGCTGGGCTGTGGTGGACCTCAGCAGCCAGACCCTGCTGCTGGCCGCTTTGGCTGGGGTGCGGGCCCCATCTGGCTAGATGATGTGGGCTGTGTGGGGACCGAGGCTTCACTGTCCGACTGCCCTGCTGCTCCCTGGGGAAAGCACAACTGCGCTCACAATGAGGATGTTGGGGTCACCTGCACTG
Seq C2 exon
GGCCCCCAGGCCTGGACTCCATCTCAGACCCCTTCAGCTGGAGCTGGATTCCTGGACTGGGGAGAGATCGGGATGCCTGGCTCCCGGGAGAGCTGGCCACCAAGCCCTCTGCAAGTGTGACTGCCAGTGTTCTGGAGAAAACAACCACGAAGGCCCCAGGGAAAATGCCTAAGAGTACTAAGAAGTGGGTGACAAAAAATGCAAAGAGACCAACCACTCAACCCCCAGTGATGCCAACCACGAAACACTCCAGGGCCCAAAGCCCCCCAGACCTAACCTCACAGACCACTGCAGCACTGACCACTGAGGCCTCCCGAAGACCTACCTCTGAGTTTACCAGAAGGCCGACCACGGAGGCCCCCCAGAGATGGACCTCTCACACCACTGCCACGCTGACCCCTCAGGCCCCCCGAGAACGGACCACTAAGACCATGGCAATGCTGACCACTCAAGGCCCCCAAGAAATGACCTCTGAGTCCACTATCAAGAGTATCCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000179954_MULTIEX2-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.983 A=0.327 C2=0.895
Domain overlap (PFAM):
C1:
NO
A:
PF0053013=SRCR=WD(100=92.5)
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTACTGTCCTTTGGGAGCCT
R:
CTCAGTGGTCAGTGCTGCAG
Band lengths:
342-660
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)