MmuEX0002514 @ mm10
Exon Skipping
Gene
ENSMUSG00000035279 | Ssc5d
Description
scavenger receptor cysteine rich family, 5 domains [Source:MGI Symbol;Acc:MGI:3606211]
Coordinates
chr7:4930002-4936826:+
Coord C1 exon
chr7:4930002-4930163
Coord A exon
chr7:4933135-4933452
Coord C2 exon
chr7:4936263-4936826
Length
318 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTCCTATTCCAGGGT
3' ss Score
11.3
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
Exon sequences
Seq C1 exon
GCATGCCTCTCGGTGCTGTGCAGCCTACAGTTCCTGCAGTGGACAGCAACAGCACAGCACACAGGCTTCTGTCTACCTCCGTGGGTCAGATGCCAGGCCCAGCAGGCCCTTGGCCTCCTTCTGCTTCTCCTACTGCCCCTCCAGAGCCTGGGCCCGAAGCTG
Seq A exon
GGTCCCCCCAGTTGCGCCTGGTGGCTGGACCCAGCAGGTGCTCTGGCCGGCTGGAGGTATGGCATGACGGACGCTGGGGGACAGTATGTGATGACAGCTGGGACATGAGAGACTCAGCTGTGGTCTGCCGGGAGCTGGGCTGTGGGAGGCCTCGGCAACCAGACCCCGCAGCAGGCCGCTTTGGCTGGGGTGCAGGCCCCATCTGGCTGGATGACGTAGGTTGTATGGGGACGGAGGCTTCACTGTCAGAATGCCCTGCTGCTTCCTGGGGGAAACACAATTGCGCCCACAATGAGGATGTCGGGGTTACCTGCACTG
Seq C2 exon
GGACCCCCGGCCTGGATACCATCTCAGACCCTTTCAGTTGGAGCTGGCTCCCTGGGCTGGGTAGAGATCAGGATGCCTGGCTCCCAGGAGAGCTAACCACCAAACCTTCTGCCAGTCTCACCTCCAGTGTGCCACAGAAACCCACAAAGGTTCCAGGGAAAGCTCCCAAGAGTACCAAGAAGTGGGTGACTAAAAATGCAAGGAGACCAACCACTCAGCCCCCTGGGATGCCAACCACCAAACATTCCAGGGCCCCAGGCACCCCAACCTCCCTACATCCAACAGCACGTACCTCTGAGTTACCAAAGAGACTGACCACTGAGGCTCCCCACAGGCAGACCTCACATACCACTGTAAGGCTGACCCCTAGGGTCCCCTGGGAGTGGACCTCAGAGCCTGTGGTGTCACAGTCCACTCAAGGTCCCCAAGAAGTGACCTCTGAGGCCACCACAACGGAAAACCCTCAGACCTCTTTGGAGCCATCGGGTGAGAACACCGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035279_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.873 A=0.280 C2=0.894
Domain overlap (PFAM):
C1:
NO
A:
PF0053013=SRCR=WD(100=92.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCTCCTTCTGCTTCTCCTA
R:
TCAGAGGTACGTGCTGTTGGA
Band lengths:
349-667
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types