GgaALTA1001230-4/4 @ galGal4
Alternative 3'ss
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:H9KZK0]
Coordinates
chrLGE64:613963-614805:-
Coord C1 exon
chrLGE64:614476-614805
Coord A exon
chrLGE64:614108-614292
Coord C2 exon
chrLGE64:613963-614107
Length
185 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
CACCCCTCTCACATTTTCAGACT
3' ss Score
9.14
Exon sequences
Seq C1 exon
TGACAGACACCTCAAAACCCAACTTCCTGCGGCTAGTGAGTGGCCCCAACCGCTGTGCTGGCAGAGTGGAGGTGCTGCATGATGGGCAGTGGGGCACAGTGTGCGATGATGGCTGGAACCTCCAGGCTGCCACTGTGGTGTGTCGGCAGCTGAACTGCGGCAGGGCTGAGTCAGCCCCCAGCGGTGCTCGCTTTGGGCAAGGCACTGGGCGTATCTGGCTGGATGACGTGAACTGTGCTGGGACTGAGGATGCCCTTCACCAGTGTCGAGCCCGTCCATGGGGACTGCATAACTGCAACCACAGAGAAGATGCTGGCGTGGTTTGCTCAG
Seq A exon
ACTCACAATTAGAGATTACAGCCAAAGTGCGGCTGGTGGATGGTCCACACCGCTGTGCCGGGAGGTTGGAGGTGTTTCAGAACGAGAGATGGGGGACCGTGTGTGGCAACGGCTGGGACATGAATGACGCCATAGTGGTGTGCCGGCAGCTGGGCTGTGGCATTGCTCTCTCGGCTCCTGTCCAG
Seq C2 exon
GCTCACTTCGGCCAAGGGTCAGATCCCATCTGGATGAACAGAGTGTCCTGCATCGGGACAGAAAGTTCCATTTCAGAATGCTTGTCGTCTCCATGGGGAATCCAACTGTGCACCCACATGGATGATGCCGGTGTGGAATGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009103-32-36,32-35,32-34,32-33-4/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=88.3)
A:
NA
C2:
PF0053013=SRCR=WD(100=91.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTATCTGGCTGGATGACGTG
R:
CATCATCCATGTGGGTGCACA
Band lengths:
248-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]