DreEX0009361 @ danRer10
Exon Skipping
Gene
ENSDARG00000001909 | VILL
Description
villin-like [Source:HGNC Symbol;Acc:HGNC:30906]
Coordinates
chr24:20296468-20305326:-
Coord C1 exon
chr24:20305245-20305326
Coord A exon
chr24:20300321-20300425
Coord C2 exon
chr24:20296468-20296576
Length
105 bp
Sequences
Splice sites
3' ss Seq
AAGGTGTGTCTCACCTGTAGGGC
3' ss Score
8.62
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GTTACTTCTGGAGGTTGCATGGAAATATATATTGGAATCAGTGCTAAATTATTGTGTCTGTTGACCTTGGCTGCTGAAAAAG
Seq A exon
GGCTGGACAGTAAAAGCCTTTCCCTGATCAGCACAAAGAGGAAAACACAATTCATTCATACAGTACAACACCAACCTCAACAACACCTCTGTCTGACACACACAG
Seq C2 exon
ATAATTCAAGCATTGAGATTTCTTCTCAGAGTTCAGCAGAATGACTGAAGCCCACGATTTGTTTAAGAACATCCAGCGAAAGCCTGGCCTGCAGATCTGGACCATCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001909_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCTGGAGGTTGCATGGAA
R:
TGATGGTCCAGATCTGCAGGC
Band lengths:
186-291
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]