DreEX0009707 @ danRer10
Exon Skipping
Gene
ENSDARG00000012642 | ZNF814
Description
zinc finger protein 814 [Source:HGNC Symbol;Acc:HGNC:33258]
Coordinates
chr24:2340191-2345044:+
Coord C1 exon
chr24:2340191-2340274
Coord A exon
chr24:2342608-2342658
Coord C2 exon
chr24:2344222-2345044
Length
51 bp
Sequences
Splice sites
3' ss Seq
GTATTTTTGTTGGTTTATAGGCC
3' ss Score
8.72
5' ss Seq
CGGGTACAT
5' ss Score
4.13
Exon sequences
Seq C1 exon
ATGCGAAGGACGCTCCTGTTGGCGCCGGTCCGTCAAACACAAGTGTGGAAGTCAAACAGGAGCCAGTGTCTTCTGATGAAGATG
Seq A exon
GCCTATAACATCTGGGAAAGAGACGACCAATGAGAACTTGTGCTAATTCGG
Seq C2 exon
AATTTCAAGTGAAATCTGAAGAAAACGACTTTGCTATAATGGATGAGGTGAAGACTGTTACGGTCTCCTCGTGTCCGTCCAGTCCTATGACTCTAAAAGAGGAAAAATAAGTGCTGTGGATGGAAACCAGGAGTTCTCTCCTGCCAAACACCACACAGATCTTCAGTGTCTATTCAAGACCGCTCCATTTCTGATGCCAAATAAACTGTTTTTGAGAAATATTGATAATATTCAAGACTTACTCCAGAACACTTCAGTCATCATGAATCCACACAACAGCAGTCCATGTGGCTTTTTTAGTTAGTTGCCATAGTCGAGGAGGAAAATATACATTCGCTTTTTTGTGGTAAACCTTCCCTATCAGATGGAACCTGATAGAACTTTCCATCCATTCAGAACATCTCAAACATGACCTACATCTGTTTAGAATCTCCAGAGATGTACAGTTGAAGACTAAAGACTGAAATTTTAATAATATATATGTCGGATCTGGTGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012642_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGTCCGTCAAACACAAGTG
R:
ATAGGACTGGACGGACACGAG
Band lengths:
148-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]