DreINT0023228 @ danRer10
Intron Retention
Gene
ENSDARG00000012642 | ZNF814
Description
zinc finger protein 814 [Source:HGNC Symbol;Acc:HGNC:33258]
Coordinates
chr24:2342608-2345044:+
Coord C1 exon
chr24:2342608-2342658
Coord A exon
chr24:2342659-2344221
Coord C2 exon
chr24:2344222-2345044
Length
1563 bp
Sequences
Splice sites
5' ss Seq
CGGGTACAT
5' ss Score
4.13
3' ss Seq
CTGTATTTTTATTTTTGCAGAAT
3' ss Score
9.77
Exon sequences
Seq C1 exon
GCCTATAACATCTGGGAAAGAGACGACCAATGAGAACTTGTGCTAATTCGG
Seq A exon
GTACATTTACGTTCATGCAGGATGTTGATTAATGTATACTGCTTCTTGTGGTGAAATAAAGAGACTAATTAAAAAAAAAAATACTAAATAGTGCTGTCAAAAGACAAATTGCATCCAAAATAAAAGCTTGCATTTACATAATGTGTGCGCATATTTATTTTACATATACTGTAAATCATACAGTCTCAAACTCAATTCCTGGAGGGCTGCTCCTCGCACAGTTTTGCTCCAAATCTAATTAAACACCTTTGATCCGACTAATCAAGGTGTTCAAGACTCCAAGAGACTATGAAGCAGGTGTGAGTTGGATGTGGTTGAAGCTAAACTATGCAGAGGTGTGGCCCTGCAGGAATGCTGGAGAACCACTGCTGTAAATAAATACACATGTATATATTTGAGAAGCTTATATATTTATTAATTAAATACTTATATGTAATATAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATACACACACACACACACACACATGGGCAATATCACAAGTGTAGCAGTGTGGGACTGGTGGGAGGTTTACATTGGCTCGAGTCCGCAGGCTGAGTGTCTTAGTGTCCCTCTAGTGGCAATAATACAGCCACATTGCACTGCTACAAGTGTGATATTGCATTTATACAACAGTTTGACAGCATAATCGTGTATATAAAAAAAGAAAATCAAACACGGAGAGTCTGAAAATCCAGCAACAGAAACTGTTGCTACTTCACACACTTCACTTTAGAGCTACTATTTGAATGATTCTCTAGCGTAATGTCTAAAGTGATGACAAAATAGGTGATTTTGCTCACACTTTAAGATTATAAGGCTGAAAGGCACGAAATGCCATCAGTCTACAGAGATTTACCAGTATTTCTCAGTTGCAATCGGGAGATCACAAATACTTAACCCTGAAAATGTCAAAGCAAACACTACCAGAGTACTATGGTATAAATACAGCACAACAACATACAAGAGAGATTGACTTAAGATGTCACTTACCCATTTATAATCATTTAAAATGTACGCAGAAAAAAAATCAGTTTTTTTTCTCCCATAAGGACTTATTATGCAATCTCTGCCGCCATCTTGTGGCGGACCGTGAACTGTCTTTGCTCTACTCAGTATGACAGGCTGATGAATGCCGATGTGCTGCATCTCAGAAATTATGAATATTTAAAATAGCCACCAATCCTTATAAATAAACTGCATAGTTGCAATCTAAACAACTACATTCTCGCCTAAAAAAACCTCAAAAGTGCATTATGTTGTTCAACAGCTGCAATATATGTCGAACTGTAGTCCTCTACTTGCCACTTGTGTGGACGGAGTAACACACAAGGGTGAAGAGGCTGTACGACTGCTGATATATTAGTTTAATATCTCACGGCTATCAGCACACACTAAGTAAATAGAACTTTTTTATTTTGGATGTGTTTAATTGTAATTAATCGGTTGACAGCACTACTAATTAATGACTTTCTGAATTAATCAATGAATGTAACTGCACTGTATTTTTATTTTTGCAG
Seq C2 exon
AATTTCAAGTGAAATCTGAAGAAAACGACTTTGCTATAATGGATGAGGTGAAGACTGTTACGGTCTCCTCGTGTCCGTCCAGTCCTATGACTCTAAAAGAGGAAAAATAAGTGCTGTGGATGGAAACCAGGAGTTCTCTCCTGCCAAACACCACACAGATCTTCAGTGTCTATTCAAGACCGCTCCATTTCTGATGCCAAATAAACTGTTTTTGAGAAATATTGATAATATTCAAGACTTACTCCAGAACACTTCAGTCATCATGAATCCACACAACAGCAGTCCATGTGGCTTTTTTAGTTAGTTGCCATAGTCGAGGAGGAAAATATACATTCGCTTTTTTGTGGTAAACCTTCCCTATCAGATGGAACCTGATAGAACTTTCCATCCATTCAGAACATCTCAAACATGACCTACATCTGTTTAGAATCTCCAGAGATGTACAGTTGAAGACTAAAGACTGAAATTTTAATAATATATATGTCGGATCTGGTGGGAAGGTCAATCTCCGATTCCCGAGGCTCTGTACTGTTTGTGGAAATTCAGAATTGACCCAAAACAAACGATCAAGATTGGATAAGATTGGCAATGAAAATTCAGAAACGGGGTTCAACTTGCATACTAAAGGCTACAGAAAATTAATGTAATAAATAAATGAACCAATAATTACCTAATTGGCTAAAAGAAGACAAATTTTACCTACACATTTTAAACATTTTAACTTAACCATTAAATAATTTTATTCAAATATTGTGCAATAACTAGAGCAAGACACAATTTGGGGTCTTTTTTTTTTTTTTTTTACTATTTTTGCAGAATTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012642:ENSDART00000132530:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGACCAATGAGAACTTGTGCT
R:
TCCTCCTCGACTATGGCAACT
Band lengths:
352-1915
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]