DreEX0009945 @ danRer10
Exon Skipping
Gene
ENSDARG00000062661 | abca4b
Description
ATP-binding cassette, sub-family A (ABC1), member 4b [Source:ZFIN;Acc:ZDB-GENE-050517-4]
Coordinates
chr2:15603294-15604094:+
Coord C1 exon
chr2:15603294-15603348
Coord A exon
chr2:15603468-15603533
Coord C2 exon
chr2:15603937-15604094
Length
66 bp
Sequences
Splice sites
3' ss Seq
TTGACATTCAAACCCCTCAGAGC
3' ss Score
6.54
5' ss Seq
AAGGTGAAT
5' ss Score
6.38
Exon sequences
Seq C1 exon
ATCTTTCTGAAAGTTACAGCAGATGGAGAGGCAGCCAACAGCTCTGTCACACCAG
Seq A exon
AGCAATGGATGCTACAACAGAGGAAAAATGGCAATGGTTTCATGAAAGACACAGGTCTTGCTGAAG
Seq C2 exon
ATGCTAACGGTGTGGGAGCCTCACTGGAGTCTGACAGCAGTGAAGGTAGAGCCTCCAGACAGGTTAAGGGCTTTAGTTTGGTCCTTAAGCAGTTCCACGCTCTTCTAGTCAAGAGGTTTCATCACGCCACACGCAGCCACAAAGACTTCCTAGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062661_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.158 A=0.170 C2=0.113
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACAGCTCTGTCACACCAG
R:
TAGGAAGTCTTTGTGGCTGCG
Band lengths:
173-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]