DreEX0011030 @ danRer10
Exon Skipping
Gene
ENSDARG00000014986 | acvr1l
Description
activin A receptor, type I like [Source:ZFIN;Acc:ZDB-GENE-990415-9]
Coordinates
chr2:41681007-41685537:+
Coord C1 exon
chr2:41681007-41681258
Coord A exon
chr2:41683394-41683608
Coord C2 exon
chr2:41685391-41685537
Length
215 bp
Sequences
Splice sites
3' ss Seq
TGTACTGTGTTTCTGAAAAGGTC
3' ss Score
8.03
5' ss Seq
GCGGTATTG
5' ss Score
3.81
Exon sequences
Seq C1 exon
ATGTCTCCATTGACTGCATGTGTGTCGGCAGTGACTGTAATGAGCAGCAGTGTACTGGTGACCAGTGTTACACCTCCGTTATCATTAGCAATGATGTGACGACGTTCAAGCGGGGCTGCTTGATCGGGCCGGCGAGCAAGCGCATGACCTGCTCCGCAACAGCTTCTGCTAGTCATGTGGTAGAATGCTGTTCTCAACACATGTGCAACGCCAACGTCTCCAAAGAGACCCTACTTCGACTGCTGCTCACAA
Seq A exon
GTCCAGAAGAAAAGAAGACTGTTCATTACCGCGTGGAAATGTTGGTTCTGTTTGTGTTGGGGCCGTTTGTGGTTCTGGGTCTGCTGTCTTTTCTGGCTTTGCTGGTGTGCCGTCGACTCCATCATGGGCGTCTGGAGAGACTGCACGAGTTTGACACTGAACAGGGGGCCATCGATGGGCTTATCGCGTCTAATGTCGGAGACAGCACACTTGCG
Seq C2 exon
GTAAAGGACGGTACGGTGAAGTGTGGAGAGGTCAATGGCAAGGAGAAAATGTAGCCGTGAAGATCTTTTCCTCTAGAGATGAGAAGTCATGGTTTCGAGAAACAGAAATTTACAACACTGTTCTGCTACGACATGAAAATATATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014986_MULTIEX2-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0106418=Activin_recp=WD(100=87.1)
A:
PF085157=TGF_beta_GS=PU(10.3=4.2)
C2:
PF0006920=Pkinase=FE(17.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCATTGACTGCATGTGTGT
R:
CCTTGCCATTGACCTCTCCAC
Band lengths:
292-507
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]