RnoEX6016925 @ rn6
Exon Skipping
Gene
ENSRNOG00000005033 | Acvr1
Description
activin A receptor type 1 [Source:RGD Symbol;Acc:620200]
Coordinates
chr3:44459185-44464960:-
Coord C1 exon
chr3:44464697-44464960
Coord A exon
chr3:44462620-44462831
Coord C2 exon
chr3:44459185-44459284
Length
212 bp
Sequences
Splice sites
3' ss Seq
CCTTTCTTCCCATTCCCCAGGGA
3' ss Score
10.2
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
Exon sequences
Seq C1 exon
ATGAGGAGCCCAAGGTCAACCCGAAGCTTTACATGTGTGTGTGTGAGGGCCTCTCCTGCGGGAACGAGGACCACTGTGAGGGCCAGCAGTGTTTTTCCTCCCTGAGCGTCAATGATGGCTTCCGCGTCTACCAGAAGGGCTGCTTTCAGGTCTATGAGCAGGGGAAGATGACGTGTAAGACCCCGCCGTCGCCTGGCCAGGCTGTGGAGTGCTGCCAAGGGGACTGGTGCAACAGGAACGTCACGGCCCGGCTGCCCACTAAAG
Seq A exon
GGAAATCCTTCCCTGGATCGCAGAACTTCCACCTGGAAGTTGGCCTTATCATCCTCTCCGTGGTGTTTGCGGTATGCCTTTTCGCTTGCATCCTTGGCGTTGCTCTCAGGAAGTTTAAAAGGCGCAATCAAGAGCGCCTGAACCCCAGAGACGTGGAGTATGGTACTATCGAAGGGCTCATCACCACCAACGTCGGAGATAGCACTCTAGCG
Seq C2 exon
GAATTACTAGATCACTCGTGTACATCAGGAAGTGGCTCCGGTCTTCCTTTTCTGGTACAGAGAACTGTGGCTCGACAGATAACCCTGTTGGAGTGTGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005033-'13-11,'13-10,15-11=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.041 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0106418=Activin_recp=WD(100=84.3)
A:
PF085157=TGF_beta_GS=PU(10.3=4.2)
C2:
PF085157=TGF_beta_GS=PD(82.8=70.6),PF0006920=Pkinase=PU(2.4=20.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGGTCAACCCGAAGCTTT
R:
GAAAAGGAAGACCGGAGCCAC
Band lengths:
307-519
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]