DreEX0012399 @ danRer10
Exon Skipping
Gene
ENSDARG00000030961 | ak8
Description
adenylate kinase 8 [Source:ZFIN;Acc:ZDB-GENE-050522-275]
Coordinates
chr5:29071528-29073447:+
Coord C1 exon
chr5:29071528-29071602
Coord A exon
chr5:29072270-29072409
Coord C2 exon
chr5:29073398-29073447
Length
140 bp
Sequences
Splice sites
3' ss Seq
TAATTTCTTTGTAAACCAAGACA
3' ss Score
-2.63
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
AGGGCAACGACAGCAACAGCTGCAGTGAGAACGCAAAACAAACTAGCCACAGCTAACGTTAGCCTACATTTCAAG
Seq A exon
ACACATTTTTAGCCTTCCTTTGCTGACCTCTCGGTGTCTCGTGGAGCATTGCAGTGATGGATTCAGCTGAAAGGCCCCTCAGAATCCCCCCTGAAATGGTCATTTATGCAGAGAAACATGACATATTTCACCTGATCCAG
Seq C2 exon
TTCCTAGAATCATATTACTGGGTCCTCCAGCATCAGGGAAAAGAACCGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000030961_MULTIEX1-1/5=C1-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.107 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF051868=Dpy-30=PU(12.9=14.3)
C2:
PF132071=AAA_17=PU(12.3=82.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGCAACGACAGCAACAG
R:
ACGGTTCTTTTCCCTGATGCT
Band lengths:
124-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]