MmuEX1003540 @ mm10
Exon Skipping
Gene
ENSMUSG00000026807 | Ak8
Description
adenylate kinase 8 [Source:MGI Symbol;Acc:MGI:1916120]
Coordinates
chr2:28698499-28702773:+
Coord C1 exon
chr2:28698499-28698966
Coord A exon
chr2:28700013-28700274
Coord C2 exon
chr2:28702689-28702773
Length
262 bp
Sequences
Splice sites
3' ss Seq
GATCCCCCATTGCTCTGTAGCTC
3' ss Score
6.21
5' ss Seq
CAGGTGATC
5' ss Score
4.28
Exon sequences
Seq C1 exon
CTCATCTTTGCTTCCCCAGCTGACAAGTCTACCGAGGCCTGAGGCCTTTGAGGAAGCAGGTCTCGGGGACAGAGGGCTGCGCTGTGGCTTTACATGGGCAGGTGTCATTATCCCAGGTCAGAACGCTAGCTCTCAGCCTTGAGGCTCCCTCTGATTTCATTCTCAGCCCCTGGGCAAGACTTTTCCCCTTTGCTAGGCCTTAGCCTCTGTTTCTGTAAAAGGTGGGGGATTGGATAGAAACTCTTCAAGCTATTGAAACTTCCTCTCTGTGCCCAGCAGCTGTCGAGGGAAGAAATCCAGAAAGAGGAAATGACTTGCCCAAAGCCACCAGCTAACTCCTCTGGCCTGTCTTATTCTGCAGTGTCTTGTCTGTCTTCGGAGCAGAAGGTTTTCATCTGACTTGACACTGCCTGGTGCTGTGGCCCCCGGAGCCCCTGAGAGCTCCTCCAGCTTGACCCATGCAAACAG
Seq A exon
CTCCACAGGCGTTCTGGGGTTTGCTTTGTGGCCCTGGGGAGGGAGAGCCGACTGCAGATCAGGACCTCGGTGGATGGAATCCGGGACCAGGACTCGCCCCAGCTGAGGCGCTCACCGATGACGCATAGCTTGGCGTCCCAGCAACGCCGTTACTAAGGAGCGGAGCGCTGTCGGAAACATGGATGCAACCACAGCCCCTCATCGCATTCCCCCGGAAATGCCTCAGTACGGGGAAGACTACTACATTTTCGAGATGATGCAG
Seq C2 exon
AACATGTTGGAGCAGCTCCTGATCCACCAGCCGGAGGACCCCATCAGCTTCATGATCACTCACCTGCGCAGGAACAATGATAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026807_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.393 C2=0.011
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGGGGGATTGGATAGAAACT
R:
TCATGAAGCTGATGGGGTCCT
Band lengths:
304-566
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types