DreEX0013048 @ danRer10
Exon Skipping
Gene
ENSDARG00000030364 | angpt1
Description
angiopoietin 1 [Source:ZFIN;Acc:ZDB-GENE-010817-1]
Coordinates
chr19:47220676-47257854:-
Coord C1 exon
chr19:47257688-47257854
Coord A exon
chr19:47231707-47231837
Coord C2 exon
chr19:47220676-47221333
Length
131 bp
Sequences
Splice sites
3' ss Seq
CTCTCTATTTTCTGTCTCAGGTT
3' ss Score
11.21
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
Exon sequences
Seq C1 exon
GGTTTTGGAAGCGTGTCGGGCGAACACTGGCTGGGGAACGAATTTGTCCACGTTCTGACCAATCAGAGGCAGCACGGCCTCCGCGTGGAGCTGAGTGACTGGGACGGACACCAGGCCTTCTCTCAGTACGACAGCTTCCACATCGACAGCGAGAAACAGAAATACAG
Seq A exon
GTTGTTTTTGAAGACCCACAGCGGGACGGCGGGACGGCAGAGCAGTTTGGCCATCCACGGAGCAGACTTCAGCACCAAAGACGTGGATAATGATAACTGCACATGCAAGTGTGCACTGATGCTCAGCGGCG
Seq C2 exon
GCTGGTGGTACGACGCCTGCGGGCCATCCAACCTGAACGGTGTGTATTACAGACAAGGACAGCATGTCGGAAAATTTAATGGAATCAAATGGCACTATTTCAAAGGGCCCAGTTACTCTCTGCGCTCCACCGTCATGATGATCCGACCAGCCGACTTCTCATAGTCCTCTTCAAAATATTGCCAGAAGCGCTGCATTCATGCACAAGACTTTTTCAGTGTACGTGCTTTGCAGCTCCGGCATGCAAATAATGCAGCATTGTTTGGTGATAGCAGGAATCCTGTGAAAAAGAGGCTGTGCTGTCACCTTCCAGGGCCTGAATGGGAATCGGCACGCGTCCCAGAGCTTTTATTTTTACATATCAGAGGTATGAATTGAAGTGCATTCACTTGTCACTCAGGACTGTTAATTCAGCACTTCAGCAAGTGAACTCAGCAGACATGCGCACTTCTAAGGGAACTTAAAGCAGCTTGAATGCCCTCCAATAACCTAAAGGGACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000030364-'6-9,'6-8,7-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(25.7=100)
A:
PF0014713=Fibrinogen_C=FE(20.6=100)
C2:
PF0014713=Fibrinogen_C=PD(23.4=90.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGCCTTCTCTCAGTACGA
R:
ATGCAGCGCTTCTGGCAATAT
Band lengths:
253-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]