MmuEX6053405 @ mm10
Exon Skipping
Gene
ENSMUSG00000022309 | Angpt1
Description
angiopoietin 1 [Source:MGI Symbol;Acc:MGI:108448]
Coordinates
chr15:42424727-42459833:-
Coord C1 exon
chr15:42459667-42459833
Coord A exon
chr15:42438275-42438405
Coord C2 exon
chr15:42424727-42427130
Length
131 bp
Sequences
Splice sites
3' ss Seq
TTCTTTCTGTTTTACCGCAGGTT
3' ss Score
11.31
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GGTTTTGGGAATCCCTCTGGTGAATATTGGCTTGGGAACGAGTTCATTTTTGCAATAACCAGTCAGAGGCAGTACATGCTGAGGATTGAGCTGATGGACTGGGAAGGGAACCGAGCCTACTCACAGTACGACAGATTCCACATAGGAAATGAAAAGCAGAACTATAG
Seq A exon
GTTATATTTAAAAGGTCACACAGGGACAGCAGGCAAACAGAGCAGCTTGATCTTACACGGTGCCGATTTCAGCACGAAGGATGCTGATAACGACAACTGTATGTGCAAATGCGCTCTCATGCTAACAGGAG
Seq C2 exon
GTTGGTGGTTCGATGCCTGTGGCCCTTCCAATCTAAATGGAATGTTCTACACTGCGGGACAAAATCATGGAAAACTGAATGGGATAAAGTGGCACTACTTCAAAGGGCCCAGTTACTCCTTACGTTCCACCACCATGATGATCCGGCCCTTGGACTTTTGAAGGTGCTCTGCCAGTATTAGAAAGCTGCAAAGAAAGCTGGGCATGTTCCCAGATGAGAAGCTAGTCAGAGGCTTCAGAAACAACCAACATTGTCTCCATTCCAGCAGCAAGTGGTTATGTCATGTCACCTGGGTTTGGAGCCTTCTGAGGTCAACAGAATCGCCACTTGGGTCCAGAGAATGCCACTCACAATCATGTTTAAAAGGGAAGAAACTTCTCAGCTTGCTGCACTTCAAAGTGCTACTGGATCACATTCTGAACTTATAACATCCTGATGCTGAATGCAACTTGTTTCATGTAAAAGCAAAAGAAGAAGAAACAGCAAATGGGAACAGGCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022309_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(25.6=100)
A:
PF0014713=Fibrinogen_C=FE(20.5=100)
C2:
PF0014713=Fibrinogen_C=PD(23.3=92.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCTGATGGACTGGGAAGG
R:
ACCTTCAAAAGTCCAAGGGCC
Band lengths:
246-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types