DreEX0013072 @ danRer10
Exon Skipping
Gene
ENSDARG00000092143 | ank1a
Description
ankyrin 1, erythrocytic a [Source:ZFIN;Acc:ZDB-GENE-041010-44]
Coordinates
chr5:68129839-68136606:-
Coord C1 exon
chr5:68136463-68136606
Coord A exon
chr5:68132150-68132250
Coord C2 exon
chr5:68129839-68130229
Length
101 bp
Sequences
Splice sites
3' ss Seq
GACGGCTCTCTCTCCTCCAGCCG
3' ss Score
9.49
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
ATTGTGAGGAAAGTGGTCCGGAGAGGAAAAGGGGAGGAAGGGGGTCAGGAGCTGATCATTGAAGGTCTGCAGCAGGATATCAGTGAGCCTGACTTTGATGGAGAACAGTTCATGAGCTATGCCGTCCTGGGACGTGACAGCAAG
Seq A exon
CCGGATGTTGTGGATGTGAAGAGAGGAGGTGCTCAGATAGTCAAATGTGCGAGTCTGCGGAGAGTAAAGCAGTGAGTCTGAGAGACTCCTCCTGCCTGCAG
Seq C2 exon
GACTCGACTCCTTCACCCAAACCATCCTTCACTGACTCATGACGGGCGTCAATTAAAGAAGAACCCAAAATCGCGGGAGATAGGCAACGGAGATCAACCACGAAAAGAGATTTTAGGATTTTTTTAAAAACAAACAAAAAAAAAAAGCAAACAATAAAGGCTAGAGGCATGATTTCTTACAAAACCAAACCAAACCATGAAAAAAGAGCAAGCATTTGAGAAGTGCTTCCTGTAATCTCAGTAATATCAGCATGTGAACGTGCTGTCGCATGGCCTGCCTTTACATACAGCACCGACCGCAAGCAATTATGAGGTGAGGAAAAATACTGTGGTACCGCAAGGGCTGTACATGGTTATTTGGAAAGACTTTTGGCCAGCAGGAGGCGCACGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000092143_MULTIEX1-3/3=2-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.086 A=0.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGAAAGTGGTCCGGAGAG
R:
TTCGTGGTTGATCTCCGTTGC
Band lengths:
244-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]