DreEX0013070 @ danRer10
Exon Skipping
Gene
ENSDARG00000092143 | ank1a
Description
ankyrin 1, erythrocytic a [Source:ZFIN;Acc:ZDB-GENE-041010-44]
Coordinates
chr5:68132150-68152782:-
Coord C1 exon
chr5:68152443-68152782
Coord A exon
chr5:68141268-68141351
Coord C2 exon
chr5:68132150-68132250
Length
84 bp
Sequences
Splice sites
3' ss Seq
TTTTGTCATATCTCACCCAGGGT
3' ss Score
6.94
5' ss Seq
AAGGTCAGC
5' ss Score
7.09
Exon sequences
Seq C1 exon
GTTAAGCGCAGGGTCGTTCCTGTCTTATCTGCAGGATCAGGGCTCTCCTGGTTGGCATTCGGCTGCAGAAGCGACTCAGAACAGATTGGCGTCTTTGCAATGCTCCCTTCCTAGGCAGGCAATAGAGTCTATGATGTCATCGGTGCGAGCTACGGTGGACTCTGACTCCAAGCAGTCTTGTTTGGGCCAGGAGGCTCTGATTGAGCCAGTGCGGGACATGGGGCACTCTGAGATCATCCATGGCCATTATCAGGGGACTCAGCCGTTTGAGAAAGGACTCGGCTTCCCGCACAGAACAACCAACATGCGCACTTGGGAGGACATGCGTCTGAGCGGACAG
Seq A exon
GGTGATGAGGCTGAGGATCTTCCAGGAGAGCAAGTGAGCGAGGAGCAATTCACAGACGAGCATGGCAACATCGTCACCAAAAAG
Seq C2 exon
CCGGATGTTGTGGATGTGAAGAGAGGAGGTGCTCAGATAGTCAAATGTGCGAGTCTGCGGAGAGTAAAGCAGTGAGTCTGAGAGACTCCTCCTGCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000092143_MULTIEX1-1/3=C1-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.825 A=0.496 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF042227=DUF416=PD(25.8=82.1)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATGGCCATTATCAGGGGA
R:
CTTTACTCTCCGCAGACTCGC
Band lengths:
173-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]