RnoEX6055952 @ rn6
Exon Skipping
Gene
ENSRNOG00000018241 | Ank1
Description
ankyrin 1 [Source:RGD Symbol;Acc:1309620]
Coordinates
chr16:73681809-73687422:-
Coord C1 exon
chr16:73687146-73687422
Coord A exon
chr16:73682797-73682880
Coord C2 exon
chr16:73681809-73681874
Length
84 bp
Sequences
Splice sites
3' ss Seq
GTCCCTTCTTCTAATTCCAGGGG
3' ss Score
8.8
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
AACAGTGGACTGGTATAAACAGGGTTCAGCAGCATCATATCCACAAGAGGCCGCACAAAGTTCCTGGCAAGAGGAGGTCACGCAAGGCCCACAGTCATTCCAGAGAAGGATCACCACCATCCAAGGGCCGGAGCCCGGCACACTTCAGGAATATGAGCAGGTGGTGGTGTCCACCAGGGAGCATGTGCAGAGGGGGCCACCTGAGAGCGACAGCCCCAAGGCCGGGAAGGACCCAAGTCTGTGGGCATCGGAGAGTGCCTTCTCTCAAGAGGTGCAG
Seq A exon
GGGGATGAGCTTCAGAATATTCCAGGAGAGCAGGTGACAGAGGAACAATTCACAGACGAACAGGGCAACATTGTCACCAAGAAG
Seq C2 exon
ATCATTCGAAAAGTCGTCCGACAGGTGGACTCCTCTGGTGCCATCGACACCCAGCAGCACGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018241-'61-64,'61-63,70-64=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.961 A=0.738 C2=0.561
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGGCACACTTCAGGAATAT
R:
CCACCTGTCGGACGACTTTTC
Band lengths:
172-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]