BtaEX0003403 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000027629 | ANK1
Description
ANK1 protein; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:A2VE25]
Coordinates
chr27:36263073-36269328:-
Coord C1 exon
chr27:36269228-36269328
Coord A exon
chr27:36264054-36264137
Coord C2 exon
chr27:36263073-36263138
Length
84 bp
Sequences
Splice sites
3' ss Seq
CTACCTTCCTCTGATTCCAGGGG
3' ss Score
8.73
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
GCCCCGGGCCTGCGGCTGAGCAGTCTGAGGTCGGCAGGGAGCAGAGACCGCCCAGCCCCCAAGAGTGGACGCAGGAGGCTGGCAGCACCGTCTCCCTCCAG
Seq A exon
GGGAATGAGCTTCAGAATATTCCAGGGGAGCAGGTGACAGAGGAGCATTTCACAGATGAGCAGGGCAACGTCATCACCAAGAAG
Seq C2 exon
ATCGTTCGCAAAGTCGTTCGCCAGATAGACCCGTCCGGAGCCGATGACACCCAGGAGCTTGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000027629-'0-2,'0-0,4-2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.286 C2=0.409
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGAGCAGTCTGAGGTCG
R:
CTCAAGCTCCTGGGTGTCATC
Band lengths:
151-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development