DreEX0013077 @ danRer10
Exon Skipping
Gene
ENSDARG00000074777 | ank1b
Description
ankyrin 1, erythrocytic b [Source:ZFIN;Acc:ZDB-GENE-091113-6]
Coordinates
chr21:21020888-21026692:-
Coord C1 exon
chr21:21026620-21026692
Coord A exon
chr21:21023243-21023263
Coord C2 exon
chr21:21020888-21021011
Length
21 bp
Sequences
Splice sites
3' ss Seq
CTTCTTCCTCCCTGCTGTAGGAG
3' ss Score
10.05
5' ss Seq
TAGGTAGGA
5' ss Score
7
Exon sequences
Seq C1 exon
ATCACCACAGAGAAGCATCGCATGAGTTTCCCCGAGACGGTGGATGAAATACTAGACGTATCTGAAGATGAAG
Seq A exon
GAGTTGCTCAGCTAACATTAG
Seq C2 exon
GTGATGAACTCCTCGGGATGGATGGGGCTCGCTATTTGAAGCTGGATGACCTGAAAGACCAGGATGATGATTTTTTGTCGCCTAAGAAAACCCTTAGAGACTTTGAGAGCGGGATGGGCACCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074777_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.520 A=0.250 C2=0.368
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSDART00000144361fB1169
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCACAGAGAAGCATCGCATG
R:
GCTTCAAATAGCGAGCCCCAT
Band lengths:
112-133
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]