DreEX0013119 @ danRer10
Exon Skipping
Gene
ENSDARG00000061736 | ank3a
Description
ankyrin 3a [Source:ZFIN;Acc:ZDB-GENE-060621-1]
Coordinates
chr17:20681746-20696761:-
Coord C1 exon
chr17:20696618-20696761
Coord A exon
chr17:20691426-20691516
Coord C2 exon
chr17:20681746-20682231
Length
91 bp
Sequences
Splice sites
3' ss Seq
GATCTGCTCGCTCTCCGCAGGCT
3' ss Score
10.85
5' ss Seq
CAGGTACTT
5' ss Score
8.17
Exon sequences
Seq C1 exon
CGGATGCACTGACAGCGGTCCTGACTAAAGTGAACCGGATGGATATTGTGACTCTGCTGGAAGGGCCCATATTTGACTATGGTAACATTTCAGGCACCAGAAGTTTTGCAGATGATAGCGCTGTGTGCCAGGAAAAGGCGGATG
Seq A exon
GCTGGTTCTCTGAGACATCCAATGCCAATGCAGAGCCAGCTGCTTCGGGACGGGGTCACGGCTCAGACCACATGGACAAACTAGAAAACAG
Seq C2 exon
GTTTGCAGGTACACTATGGATCAGTTTCCTGAACGCCGGGCCCACACACGCTGAAAAGAGACATTAGGCCTGAAAACCATACTGCTTCCATTCTGAAACGCATGGTGTTCAAAGAGACTGAACTCTGAACTCTCCGCTTGCGCATGAGCATGCATCACACTGCTGACACACTTCCTGTTCCAAGGGGGTCTTTAAGAGTTCTCCTTCCTGAAATGGGTCCCGGTGAATTCTACTTCCTCTCTCTGTTGGGTCCTATGTAACTCAACTCTCTGCTTCTGGGGGACCTACGAGATTACAGTTCTTGATGGTCAACACTTGCGCTGAAACAGGAAATCAGAAACTATGTTGTGTGTGCCATGAATATCAGATGATTAAGTAAAGGGGGGTACATTCAGAATACTCCAAACTTTACACTCACACAAATTTCCCTGTGACCAAAGATGGCACAAAAGCTCTTTTTCGTGTTTTAGGAGGGGAAATAAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061736_MULTIEX1-1/6=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.160 A=0.843 C2=NA
Domain overlap (PFAM):
C1:
PF0053117=Death=PD(27.4=46.9)
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGATGATAGCGCTGTGTG
R:
GCAAGCGGAGAGTTCAGAGTT
Band lengths:
179-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]