DreEX0014983 @ danRer10
Exon Skipping
Gene
ENSDARG00000068148 | arrdc1a
Description
arrestin domain containing 1a [Source:ZFIN;Acc:ZDB-GENE-030925-15]
Coordinates
chr5:28916691-28920671:-
Coord C1 exon
chr5:28920167-28920671
Coord A exon
chr5:28919079-28919121
Coord C2 exon
chr5:28916691-28917332
Length
43 bp
Sequences
Splice sites
3' ss Seq
ACTTTTCATTCATTCCTCAGCAA
3' ss Score
6.99
5' ss Seq
CTGGTAGGA
5' ss Score
6.77
Exon sequences
Seq C1 exon
TCTGAAATACCCCGAGGTGGCATTAACTCTGCCCATTTGCATTGGAAGCGTGGCATTGGATCCCTCTCAGCCTTCTCACTCCCAGACGGTTGCCCCTATGCCAGCCCCACGTATCACCCCTGCTCCATCTCCATCTGCTCCTGAATCTGAAGCTTCAAATCTGCCACCACGGCCAGCCCCAAAACCTGCACCCAAACCCAGGCCTCGCAGCACCCATGCTTCCCCCAGTGCGCCTCCAGTCGATCTGTACCCCCAGCTCCCAAGTGTGAGTAACTACAATGGAGAAATGCTCAAGAGCCCCCATCAAGAGCCGGGCTCTCAGGGTCCAGTGTCCCCCAATGCCTTCAGCTACGCTCCTGGCCTGAGCTTCAGACAGAGACAGAGCTCCAGCGGCCCATCAGCACCTCCTCCATCCTTATCCAGCAGCTCTCAGGACAGGAATCAGATGCCCTCTTCTGCGAGCGTGCCTCCCAGCTATAGGTCTTCAGCTTATCCACAAG
Seq A exon
CAACAAACTCTGAGGTATTGGATGAGAGTTCCAGTAAGAACTG
Seq C2 exon
AGGCTCCACCTTCTTATGAAGATAGCTTCAATACATAGGATGTCACCCAGTGTATGGATAGTAGAAGAAAAGCCAAGGAAAATATTCATAACACTACTGTGACTTTAAAATAAATATGGACATCAAGCACTTTTGGACCAAATGTGTGAATATACAAATCCCGTGATCTACAGTCTTACAAACTCATCAGAACTGGACACAATACTTCAGATGTGCCTTCAGCTTTGGAATTGAGTCATTTTGCTTTTAGTGTTTGTTATTGTTTTACCATTTGCTTTTATAAGTATTAAGTACTCAAAGATTTGACGATTAGACTAATCACACAAGGTAAATTTGTTTTTATTAGCACATTTTGGCACATAATTTTTTTTCTTGATTGAAATAGTTTTTTTTTGTTTAATATATGCCTAGATGACTTTGTTTGGGTACACTGTATATCTGTCATCTTCAAGTCATTATACCAGACAACTATATGTTTCAATTTCTGTGGTTCTTTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068148_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.876 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0275217=Arrestin_C=PD(16.0=11.8)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSDART00000098360fB1340
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGCTCTCAGGACAGGAAT
R:
TCCATACACTGGGTGACATCCT
Band lengths:
137-180
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]