DreINT0033637 @ danRer10
Intron Retention
Gene
ENSDARG00000068148 | arrdc1a
Description
arrestin domain containing 1a [Source:ZFIN;Acc:ZDB-GENE-030925-15]
Coordinates
chr5:28916691-28920671:-
Coord C1 exon
chr5:28920167-28920671
Coord A exon
chr5:28917333-28920166
Coord C2 exon
chr5:28916691-28917332
Length
2834 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGA
5' ss Score
4.59
3' ss Seq
TGATTTTATGTCTTTAACAGAGG
3' ss Score
8.28
Exon sequences
Seq C1 exon
GTCTATCTGAAATACCCCGAGGTGGCATTAACTCTGCCCATTTGCATTGGAAGCGTGGCATTGGATCCCTCTCAGCCTTCTCACTCCCAGACGGTTGCCCCTATGCCAGCCCCACGTATCACCCCTGCTCCATCTCCATCTGCTCCTGAATCTGAAGCTTCAAATCTGCCACCACGGCCAGCCCCAAAACCTGCACCCAAACCCAGGCCTCGCAGCACCCATGCTTCCCCCAGTGCGCCTCCAGTCGATCTGTACCCCCAGCTCCCAAGTGTGAGTAACTACAATGGAGAAATGCTCAAGAGCCCCCATCAAGAGCCGGGCTCTCAGGGTCCAGTGTCCCCCAATGCCTTCAGCTACGCTCCTGGCCTGAGCTTCAGACAGAGACAGAGCTCCAGCGGCCCATCAGCACCTCCTCCATCCTTATCCAGCAGCTCTCAGGACAGGAATCAGATGCCCTCTTCTGCGAGCGTGCCTCCCAGCTATAGGTCTTCAGCTTATCCACAAG
Seq A exon
GTGTGACACACAGTCATTGCATTTGAATAATTGTTGGTTATATAGAGGGATTCAGGTTGACCTCTTTGGTGAAGGATGGATTACATCACTGACTACATTTACATAAACATAGTAATCTAATTTTTTGCCTTAATCTGAATAAGACAATAATATAATTAGGATGTTCACATGAGTTGCTTTTTGAATGTTCCTTTTAGGGCTGGGCGATTCATCGAAAAGAAATCGAAATCGACATTCAGAAGCTAAAATCCATCTAATTTTCTAAGGACAATTTTTCAATTACTTTCCCTACCTTGTGTGGAGTCACGTATACCCCACTCTGTTAAGGCAGAATTACACTTATTATATTATGATTTATAATTAATCTATTATTATGACATTATACTTCTGTTAAGGGTCCGACACTGCCTTTGCATACCTGTGCAGCGCTCAAAAAAATGTACTTGTACGTCTCAACGACGCGTTTGTGATTGGTTGGTTTGGTATGACAGTGGGTGGCGCAGAGAGCTGCATTTTAGGCAATGTGTTTTAGTTGTTTAGCATTGATATTCAATAAATAATCATAGATGGTAGATAGTGTGTGTTTACAAATCAAGTAATGCTCCCTTCATTTAAAAATCTCTCACATGTAATATGTGAGCATATTTACTGTACAAAACTTGTCCCTATGAGGGCAAAGAAACAAAATAGATACATAAAATAATCATTCATTAATCGTAATCGAGTTGTTCAATTCATTGAAATCTTGATTTTAGGCCAATCGCCCAGCCCAAGTTCCTTTCATGTTCCCGTTTTACATGTTATAGTACATAGTTTGATTAACGTCATTGCATCCCCATTTGACACTAGTTTTTTTCCAGTATTTCTCACAACACCAGTTTGTGTTAATCATGGCACCATTTGAGATTTGTTTTTAATTTTGTGACAAGATCAACAGCAGTTCATTTCTCACAGTATGCGTGCAAATAGATGATGGCAGATACAAATTCTCAAGCAACAGGTCAACTCTGCCATTTCATTCACTAACTTTTCATTCATTCCTCAGCAACAAACTCTGAGGTATTGGATGAGAGTTCCAGTAAGAACTGGTAGGAGAATTCTCAGCATAGTCATCATTTCCTGTTTGCACCAAAATGCTTTCTTGCTTTTAGCCATTCTTATTTGTTTGTCATCAAACACCTAACAACTGCCATGTGCGCATCTTGTAGCAAAATTTTGCGAAAAGAACTACAGAACGGTGATAATTTGATTAAGGTGTTTACATGTCTGTACTGCACTTTAATAATGCGACTAAAATAGGCGTACTCCACATGTCCTAATTTGATTTCTGTGTAGTTTGATTATTACTTCAGTCGGATTAAGGTAATTAAAAAATGCACCTTACATGGTAGACTTTTAATTAGAGTATTGTCTTAATAATATTAAAATCGTAGTATTGGTGTCCATGCAAACTAACTAATTGAGAATGTCTGCATTTACTTGGGGGTTGTCATGGTACTGGAATTTCGTACTAATTGATACTGAAATTTTAAAAACGTACATTTTCCGCGAACATTTGAACGATGTTGCCACTGTGTTTATCTGCTCAACAGAAAAAAAATGCTGTTTATTAAGTATAAACACAAATACAGGGACACTGGAGCATTTCAAAGTCATGTAGATCAGCTGGTTTGTCTATAAGCAAACATATGAGCCATCCACTGATGAATCGCGACTTTAAAATGTTCAGGTGTCCCTGTATCTGTGGTTACACTCAGCAAACAGCAATGAGTTTGGTGAAGTGATGACCTTCACAGCCAATCACAGTCATTTCTGTTGAGCTCATGTACACAATGGAAAATTAGCTGTGTTTAAAAATGTGCTCAACATTGCTCAAATGTTTGCAGGAAATGGAACATTTAAAATTTTAGTACCCATTGGTACCGAATTCTAGTATTGCAACTTCCCTACTTGTAATAACATTGAGTTTCATGCTCAGTCAGTCCATCTAGGAATTTGAAATTCTGCAAATCACAGAATTTAAAGGGACAGTTCACCTAAAAATGAAAAGGCGGTCATCGTTTACTTTTTACCCTTTACTTGTTCAAAACCAGTTTGAGTTTTTGTTTCGTTAAGCACAAAAGAGGATGTATTGAAGAATGTTGTGTAACTTAACCTGTAACCATTGACATCCATAGTATTTGTTGGTCCTAAATTCTTACATAACATAACAAAACAAAAAACTCAAACAGGTTTGGAATAAGTGAAGGGTAAGTAAATGATGACAGAATTGACATGTTTTGGGTGAACTATCCCTTTAATACAAAATCAAGCAAATGCCATTGAATTCAGAGGAGCTGGCTCTTGACATTTTTATTGTATTTTACAGTTTCTTTAAGTTTGCTTAGCCATGTATGATTGAAACTCTCATTCAGCCAAAAGCTGCTTCAAGTAGACTTCGGCTGAATGTGAATTTTTATTGAAAATAAAAATGTCTTTATATTCTCACAGCAGAACAGCCCAATAAAAGCTGTCATTTTAGGTTGCAAAAATCAGAAAAAAGGCCTTCTGAAATCTTGGAGGGACTGCTCAATAGCAGCTCTTATTATCCATTACCATTACAATCGTTGTAAATAATTAAAACATTTTTTTTAAAGAATTAAAAAAGAATTTAAAAAGAAAAGAATGAAAGTATTTAACTTGTATTTTTTACAGTAGAAGGAAAGTGAAAAGTTCTATTTTCTTACTATTTAGTTCCAAATGTTTATAAATGTTATTGTAAATATATTTCATTGCTTGTTCATTTGGTAAGTACAGTGTTACCTGCTATTAATTTGATTTTATGTCTTTAACAG
Seq C2 exon
AGGCTCCACCTTCTTATGAAGATAGCTTCAATACATAGGATGTCACCCAGTGTATGGATAGTAGAAGAAAAGCCAAGGAAAATATTCATAACACTACTGTGACTTTAAAATAAATATGGACATCAAGCACTTTTGGACCAAATGTGTGAATATACAAATCCCGTGATCTACAGTCTTACAAACTCATCAGAACTGGACACAATACTTCAGATGTGCCTTCAGCTTTGGAATTGAGTCATTTTGCTTTTAGTGTTTGTTATTGTTTTACCATTTGCTTTTATAAGTATTAAGTACTCAAAGATTTGACGATTAGACTAATCACACAAGGTAAATTTGTTTTTATTAGCACATTTTGGCACATAATTTTTTTTCTTGATTGAAATAGTTTTTTTTTGTTTAATATATGCCTAGATGACTTTGTTTGGGTACACTGTATATCTGTCATCTTCAAGTCATTATACCAGACAACTATATGTTTCAATTTCTGTGGTTCTTTTCTGACTTCAATATTGTTTTGCTTTTTGTCGAGATAAAAATGTTTAGTTTTTTGCACAATTCTTTGCTTACTAAAAACCTTTTGTATTTGAAAAGTTATTTACAATTTATGTAGTGTACAGACTAATAAAACTATTTTGAAACTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068148:ENSDART00000098360:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.876 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0275217=Arrestin_C=PD(16.0=11.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]